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  1. IGB
  2. IGBF-2892

Implement next iteration of track hub converter interface

    Details

    • Type: Task
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Affects Version/s: None
    • Fix Version/s: None
    • Labels:
      None
    • Story Points:
      1
    • Sprint:
      Summer 2 2021 Jun 28 - Jul 9, Summer 3 2021 Jul 12 - Jul 23, Summer 4 2021 Aug 2 - Aug 13

      Description

      See design from linked issue.

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            Hide
            ann.loraine Ann Loraine added a comment -

            EC2 host for testing the new interface is "bioviztest.bioviz.org" (see AWS console).

            Show
            ann.loraine Ann Loraine added a comment - EC2 host for testing the new interface is "bioviztest.bioviz.org" (see AWS console).
            Hide
            pbadzuh Philip Badzuh (Inactive) added a comment -

            Please see the branch with my implementation here.

            The test ec2 is serving the changes.

            Show
            pbadzuh Philip Badzuh (Inactive) added a comment - Please see the branch with my implementation here . The test ec2 is serving the changes.
            Hide
            ann.loraine Ann Loraine added a comment -

            Change request:

            • Change "Ingegrated" to "Integrated"
            Show
            ann.loraine Ann Loraine added a comment - Change request: Change "Ingegrated" to "Integrated"
            Hide
            pbadzuh Philip Badzuh (Inactive) added a comment -

            Sure, see the same branch with the update.

            Show
            pbadzuh Philip Badzuh (Inactive) added a comment - Sure, see the same branch with the update.
            Hide
            pbadzuh Philip Badzuh (Inactive) added a comment -

            I think adding a link to the UCSC track hub listing page could be useful. What do you think, [~aloraine]?

            Show
            pbadzuh Philip Badzuh (Inactive) added a comment - I think adding a link to the UCSC track hub listing page could be useful. What do you think, [~aloraine] ?
            Hide
            ann.loraine Ann Loraine added a comment - - edited

            I agree. Although .. it's not super clear how to enter the track hub URLs listed there into the tool.

            Can you explain how to identify the track hub URL from the page and then enter it into our interface?

            A suggestion, but this should probably be part of another ticket:

            You could implement a kind of screen scraper js application that would harvest the track URLs from that page and list them in a more user friendly fashion, with a "copy" icon that would let the user copy the URL so that they could then easily paste it into the track hub facade text box. If you want to design something like that and implement it, please make it a new ticket as this could probably be at least one or two days of effort and should be captured in a new ticket.

            For now, feel free to submit a PR. Improvements to the page can again be done as new issue / ticket in Jira.

            Show
            ann.loraine Ann Loraine added a comment - - edited I agree. Although .. it's not super clear how to enter the track hub URLs listed there into the tool. Can you explain how to identify the track hub URL from the page and then enter it into our interface? A suggestion, but this should probably be part of another ticket: You could implement a kind of screen scraper js application that would harvest the track URLs from that page and list them in a more user friendly fashion, with a "copy" icon that would let the user copy the URL so that they could then easily paste it into the track hub facade text box. If you want to design something like that and implement it, please make it a new ticket as this could probably be at least one or two days of effort and should be captured in a new ticket. For now, feel free to submit a PR. Improvements to the page can again be done as new issue / ticket in Jira.
            Hide
            pbadzuh Philip Badzuh (Inactive) added a comment -

            I think that would be a useful feature; I'll create a ticket for it.

            In the meantime, here is the PR for this one.

            Show
            pbadzuh Philip Badzuh (Inactive) added a comment - I think that would be a useful feature; I'll create a ticket for it. In the meantime, here is the PR for this one.
            Hide
            ann.loraine Ann Loraine added a comment -

            Note: The new commit adds a link to the menu, which might affect App Store and Genome Dashboard, which are using the same menu. Need to check that deployment still works OK for those two sites.

            Show
            ann.loraine Ann Loraine added a comment - Note: The new commit adds a link to the menu, which might affect App Store and Genome Dashboard, which are using the same menu. Need to check that deployment still works OK for those two sites.
            Hide
            ann.loraine Ann Loraine added a comment -

            The Genome Dashboard menu is fine, but I have not testing deployment of App Site. Moving to Done.

            Show
            ann.loraine Ann Loraine added a comment - The Genome Dashboard menu is fine, but I have not testing deployment of App Site. Moving to Done.

              People

              • Assignee:
                pbadzuh Philip Badzuh (Inactive)
                Reporter:
                ann.loraine Ann Loraine
              • Votes:
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                Watchers:
                2 Start watching this issue

                Dates

                • Created:
                  Updated:
                  Resolved: