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  1. IGB
  2. IGBF-2898

Add listing of UCSC hubs to the bioviz trackhubs page

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          3
        • Epic Link:
        • Sprint:
          Summer 3 2021 Jul 12 - Jul 23, Summer 4 2021 Aug 2 - Aug 13, Fall 1 2021 Aug 16 - Aug 27

          Description

          Scrape available UCSC track hub URLs and allow users of the bioviz trackhub UI to:

          • scroll through the list of available URLs
          • copy URLs and/or populate the converter input field
          • search URLs by the text contained within

          A collection of public hubs can be found here.

            Attachments

              Issue Links

              blocks

              Task - A task that needs to be done. IGBF-2892 Implement next iteration of track hub converter interface

              • Major - Major loss of function.
              • Closed
              relates to

              Bug - A problem which impairs or prevents the functions of the product. IGBF-2903 Investigate why genome and assembly trackhub data sources are not loaded in IGB and fix the problem.

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-2929 Fix hub URL validation

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                pbadzuh Philip Badzuh (Inactive) created issue -
                pbadzuh Philip Badzuh (Inactive) made changes -
                Field Original Value New Value
                Epic Link IGBF-1765 [ 17855 ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Link This issue blocks IGBF-2892 [ IGBF-2892 ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Epic Link IGBF-1765 [ 17855 ] IGBF-2831 [ 19524 ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Status In Progress [ 3 ] To-Do [ 10305 ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Description Scrape available UCSC track hub URLs and allow users of the bioviz trackhub UI to:
                - scroll through the list of available URLs
                - copy URLs and/or populate the converter input field
                - search URLs by the text contained within                 		Scrape available UCSC track hub URLs and allow users of the bioviz trackhub UI to:
                - scroll through the list of available URLs
                - copy URLs and/or populate the converter input field
                - search URLs by the text contained within

                Collection of public hubs can be found [here|https://genome.ucsc.edu/cgi-bin/hgHubConnect]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Description Scrape available UCSC track hub URLs and allow users of the bioviz trackhub UI to:
                - scroll through the list of available URLs
                - copy URLs and/or populate the converter input field
                - search URLs by the text contained within

                Collection of public hubs can be found [here|https://genome.ucsc.edu/cgi-bin/hgHubConnect]                 		Scrape available UCSC track hub URLs and allow users of the bioviz trackhub UI to:
                - scroll through the list of available URLs
                - copy URLs and/or populate the converter input field
                - search URLs by the text contained within

                A collection of public hubs can be found [here|https://genome.ucsc.edu/cgi-bin/hgHubConnect#publicHubs]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Description Scrape available UCSC track hub URLs and allow users of the bioviz trackhub UI to:
                - scroll through the list of available URLs
                - copy URLs and/or populate the converter input field
                - search URLs by the text contained within

                A collection of public hubs can be found [here|https://genome.ucsc.edu/cgi-bin/hgHubConnect#publicHubs]                 		Scrape available UCSC track hub URLs and allow users of the bioviz trackhub UI to:
                - scroll through the list of available URLs
                - copy URLs and/or populate the converter input field
                - search URLs by the text contained within

                A collection of public hubs can be found [here|https://genome.ucsc.edu/cgi-bin/hgHubConnect#publicHubs].
                ann.loraine Ann Loraine made changes -
                Description Scrape available UCSC track hub URLs and allow users of the bioviz trackhub UI to:
                - scroll through the list of available URLs
                - copy URLs and/or populate the converter input field
                - search URLs by the text contained within

                A collection of public hubs can be found [here|https://genome.ucsc.edu/cgi-bin/hgHubConnect#publicHubs].                 		Scrape available UCSC track hub URLs and allow users of the bioviz trackhub UI to:
                - scroll through the list of available URLs
                - copy URLs and/or populate the converter input field
                - search URLs by the text contained within

                A collection of public hubs can be found [here|https://genome.ucsc.edu/cgi-bin/hgHubConnect#publicHubs].

                pbadzuh Philip Badzuh (Inactive) made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Link This issue relates to IGBF-2903 [ IGBF-2903 ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Assignee Philip Badzuh [ pbadzuh ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Story Points 2 3
                ann.loraine Ann Loraine made changes -
                Sprint Summer 3 2021 Jul 12 - Jul 23 [ 125 ] Summer 3 2021 Jul 12 - Jul 23, Summer 4 2021 Aug 2 - Aug 13 [ 125, 126 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Attachment 2021-08-10-Suggestions.png [ 16778 ]
                ann.loraine Ann Loraine made changes -
                Status First Level Review in Progress [ 10301 ] To-Do [ 10305 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ] Philip Badzuh [ pbadzuh ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                ann.loraine Ann Loraine made changes -
                Sprint Summer 3 2021 Jul 12 - Jul 23, Summer 4 2021 Aug 2 - Aug 13 [ 125, 126 ] Summer 3 2021 Jul 12 - Jul 23, Summer 4 2021 Aug 2 - Aug 13, Fall 1 2021 Aug 16 - Aug 27 [ 125, 126, 127 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                pbadzuh Philip Badzuh (Inactive) made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Assignee Philip Badzuh [ pbadzuh ]
                ann.loraine Ann Loraine made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                pbadzuh Philip Badzuh (Inactive) made changes -
                Link This issue relates to IGBF-2929 [ IGBF-2929 ]
                ann.loraine Ann Loraine made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                ann.loraine Ann Loraine made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                ann.loraine Ann Loraine made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ] Philip Badzuh [ pbadzuh ]

                  People

                  • Assignee:
                    pbadzuh Philip Badzuh (Inactive)
                    Reporter:
                    pbadzuh Philip Badzuh (Inactive)
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    3 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: