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  1. IGB
  2. IGBF-2987

Fix Galaxy IGB CORS issue

        Details

        • Type: Bug
        • Status: Closed (View Workflow)
        • Priority: Blocker
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Situation: To connect Galaxy data to IGB, there is a bridge on bioviz.org. Currently, that bridge is accessed at http://bioviz.org/galaxy.html. This seems to be causing a CORS issue on Google Chrome and Microsoft Edge web browsers. An article from the Chrome developers states that changes were rolled out regarding CORS in September 2021.

          Using https://bioviz.org/galaxy.html seems to fix the issue. We may be able to update the Galaxy code to instead use https.

          Task: Determine how/if we can update the Galaxy code to point to https://bioviz.org/galaxy.html

            Attachments

            1. access.png
              access.png
              71 kB
            2. chrome.png
              chrome.png
              95 kB
            3. chrome - no igb running.png
              chrome - no igb running.png
              98 kB
            4. edge - igb not running.png
              edge - igb not running.png
              102 kB
            5. edge - igb running.png
              edge - igb running.png
              108 kB
            6. firefox igb not running .png
              firefox igb not running .png
              93 kB
            7. firefox - igb running.png
              firefox - igb running.png
              91 kB

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-2999 Fix eFP-Seq browser JS to work with Safari

              • Major - Major loss of function.
              • Closed

              Bug - A problem which impairs or prevents the functions of the product. IGBF-2490 Investigate: Fix implementation of requests to IGB endpoints to support safari etc.

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-2420 Determine why Safari is not letting the igb status check occur when choosing View in IGB on Safari

              • Blocker - Blocks development and/or testing work, production could not run.
              • Closed

              Task - A task that needs to be done. IGBF-2485 Investigate IGB localhost endpoint HTTPS

              • Blocker - Blocks development and/or testing work, production could not run.
              • Closed

              Task - A task that needs to be done. IGBF-2505 Turn off redirection to https for galaxy bridge in bioviz-playbooks

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                nfreese Nowlan Freese created issue -
                nfreese Nowlan Freese made changes -
                Field Original Value New Value
                Epic Link IGBF-1880 [ 17970 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-2160 [ IGBF-2160 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-2420 [ IGBF-2420 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-2485 [ IGBF-2485 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-2490 [ IGBF-2490 ]
                nfreese Nowlan Freese made changes -
                Comment [ galaxy.html:1 Access to XMLHttpRequest at 'http://127.0.0.1:7085/igbStatusCheck' from origin 'http://bioviz.org' has been blocked by CORS policy: The request client is not a secure context and the resource is in more-private address space `local`.
                127.0.0.1:7085/igbStatusCheck:1 Failed to load resource: net::ERR_FAILED
                galaxy.html:1 Access to XMLHttpRequest at 'http://localhost:7085/igbGalaxyDataView?version=hg38&loadresidues=false&feature_url_0=https://usegalaxy.org/display_application/bbd44e69cb8906b5c5cb168c2510f674/igb_bedgraph/View/41adb0ecaead1e8f/data/bedgraph_space_bedGraph.bed.bedgraph&sym_name_0=bedgraph_space_bedGraph&sym_method_0=https://usegalaxy.org/display_application/bbd44e69cb8906b5c5cb168c2510f674/igb_bedgraph/View/41adb0ecaead1e8f/data/bedgraph_space_bedGraph.bed.bedgraph&query_url=https://usegalaxy.org/display_application/bbd44e69cb8906b5c5cb168c2510f674/igb_bedgraph/View/41adb0ecaead1e8f/data/bedgraph_space_bedGraph.bed.bedgraph&server_url=galaxy' from origin 'http://bioviz.org' has been blocked by CORS policy: The request client is not a secure context and the resource is in more-private address space `local`.
                localhost:7085/igbGalaxyDataView?version=hg38&loadresidues=false&feature_url_0=https://usegalaxy.org/display_application/bbd44e69cb8906b5c5cb168c2510f674/igb_bedgraph/View/41adb0ecaead1e8f/data/bedgraph_space_bedGraph.bed.bedgraph&sym_name_0=bedgraph_space_bedGraph&sym_method_0=https://usegalaxy.org/display_application/bbd44e69cb8906b5c5cb168c2510f674/igb_bedgraph/View/41adb0ecaead1e8f/data/bedgraph_space_bedGraph.bed.bedgraph&query_url=https://usegalaxy.org/display_application/bbd44e69cb8906b5c5cb168c2510f674/igb_bedgraph/View/41adb0ecaead1e8f/data/bedgraph_space_bedGraph.bed.bedgraph&server_url=galaxy:1 Failed to load resource: net::ERR_FAILED
                galaxy.html:1 Access to XMLHttpRequest at 'https://www.bioviz.org/menu.html?v=12392829' (redirected from 'http://bioviz.org/menu.html?v=12392829') from origin 'http://bioviz.org' has been blocked by CORS policy: Response to preflight request doesn't pass access control check: No 'Access-Control-Allow-Origin' header is present on the requested resource.
                www.bioviz.org/menu.html?v=12392829:1 Failed to load resource: net::ERR_FAILED
                galaxy.html:1 Access to XMLHttpRequest at 'https://www.bioviz.org/footer.html?v=12392829' (redirected from 'http://bioviz.org/footer.html?v=12392829') from origin 'http://bioviz.org' has been blocked by CORS policy: Response to preflight request doesn't pass access control check: No 'Access-Control-Allow-Origin' header is present on the requested resource.
                www.bioviz.org/footer.html?v=12392829:1 Failed to load resource: net::ERR_FAILED ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Epic Link IGBF-1880 [ 17970 ] IGBF-1765 [ 17855 ]
                ann.loraine Ann Loraine made changes -
                Issue Type Task [ 3 ] Bug [ 1 ]
                ann.loraine Ann Loraine made changes -
                Priority Major [ 3 ] Blocker [ 1 ]
                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ]
                nfreese Nowlan Freese made changes -
                Status In Progress [ 3 ] To-Do [ 10305 ]
                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                ann.loraine Ann Loraine made changes -
                Sprint Fall 5 2021 Oct 11 - Oct 22 [ 131 ] Fall 5 2021 Oct 11 - Oct 22, Fall 6 2021 Oct 25 - Nov 5 [ 131, 132 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-2505 [ IGBF-2505 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-44 [ IGBF-44 ]
                nfreese Nowlan Freese made changes -
                Status In Progress [ 3 ] To-Do [ 10305 ]
                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                nfreese Nowlan Freese made changes -
                Comment [ Testing on https://bioviztest.bioviz.org/ ]
                nfreese Nowlan Freese made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                ann.loraine Ann Loraine made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                ann.loraine Ann Loraine made changes -
                Comment [ I'm surprised this is allowed:

                {code}
                      location.replace(`https:${location.href.substring(location.protocol.length)}`);
                {code}

                This amounts to tricking the browser into thinking that the content received from the server arrived encrypted, when it was not.

                ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ] Nowlan Freese [ nfreese ]
                nfreese Nowlan Freese made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ]
                ann.loraine Ann Loraine made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                nfreese Nowlan Freese made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                omarne Omkar Marne (Inactive) made changes -
                Assignee Omkar Marne [ omarne ]
                omarne Omkar Marne (Inactive) made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                nfreese Nowlan Freese made changes -
                Attachment access.png [ 16825 ]
                omarne Omkar Marne (Inactive) made changes -
                Attachment chrome.png [ 16826 ]
                omarne Omkar Marne (Inactive) made changes -
                Attachment chrome - no igb running.png [ 16827 ]
                omarne Omkar Marne (Inactive) made changes -
                Attachment firefox - igb running.png [ 16828 ]
                omarne Omkar Marne (Inactive) made changes -
                Attachment firefox igb not running .png [ 16829 ]
                omarne Omkar Marne (Inactive) made changes -
                Attachment edge - igb running.png [ 16830 ]
                omarne Omkar Marne (Inactive) made changes -
                Attachment edge - igb not running.png [ 16831 ]
                omarne Omkar Marne (Inactive) made changes -
                Status Post-merge Testing In Progress [ 10003 ] To-Do [ 10305 ]
                omarne Omkar Marne (Inactive) made changes -
                Assignee Omkar Marne [ omarne ] Nowlan Freese [ nfreese ]
                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                nfreese Nowlan Freese made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                nfreese Nowlan Freese made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                nfreese Nowlan Freese made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                nfreese Nowlan Freese made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                ann.loraine Ann Loraine made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Link This issue relates to IGBF-2999 [ IGBF-2999 ]
                nfreese Nowlan Freese made changes -
                Assignee Omkar Marne [ omarne ]
                omarne Omkar Marne (Inactive) made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                omarne Omkar Marne (Inactive) made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                omarne Omkar Marne (Inactive) made changes -
                Assignee Omkar Marne [ omarne ] Nowlan Freese [ nfreese ]

                  People

                  • Assignee:
                    nfreese Nowlan Freese
                    Reporter:
                    nfreese Nowlan Freese
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    3 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: