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  1. IGB
  2. IGBF-2987

Fix Galaxy IGB CORS issue

        Details

        • Type: Bug
        • Status: Closed (View Workflow)
        • Priority: Blocker
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Situation: To connect Galaxy data to IGB, there is a bridge on bioviz.org. Currently, that bridge is accessed at http://bioviz.org/galaxy.html. This seems to be causing a CORS issue on Google Chrome and Microsoft Edge web browsers. An article from the Chrome developers states that changes were rolled out regarding CORS in September 2021.

          Using https://bioviz.org/galaxy.html seems to fix the issue. We may be able to update the Galaxy code to instead use https.

          Task: Determine how/if we can update the Galaxy code to point to https://bioviz.org/galaxy.html

            Attachments

            1. access.png
              access.png
              71 kB
            2. chrome.png
              chrome.png
              95 kB
            3. chrome - no igb running.png
              chrome - no igb running.png
              98 kB
            4. edge - igb not running.png
              edge - igb not running.png
              102 kB
            5. edge - igb running.png
              edge - igb running.png
              108 kB
            6. firefox igb not running .png
              firefox igb not running .png
              93 kB
            7. firefox - igb running.png
              firefox - igb running.png
              91 kB

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-2999 Fix eFP-Seq browser JS to work with Safari

              • Major - Major loss of function.
              • Closed

              Bug - A problem which impairs or prevents the functions of the product. IGBF-2490 Investigate: Fix implementation of requests to IGB endpoints to support safari etc.

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-2420 Determine why Safari is not letting the igb status check occur when choosing View in IGB on Safari

              • Blocker - Blocks development and/or testing work, production could not run.
              • Closed

              Task - A task that needs to be done. IGBF-2485 Investigate IGB localhost endpoint HTTPS

              • Blocker - Blocks development and/or testing work, production could not run.
              • Closed

              Task - A task that needs to be done. IGBF-2505 Turn off redirection to https for galaxy bridge in bioviz-playbooks

              • Major - Major loss of function.
              • Closed

                Activity

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                15 older comments
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                ann.loraine Ann Loraine added a comment -

                Quick request for Nowlan Freese: Can you provide a link to the source for the diagram you attached? (Or if you created it, do please indicate that.)

                Show
                ann.loraine Ann Loraine added a comment - Quick request for Nowlan Freese : Can you provide a link to the source for the diagram you attached? (Or if you created it, do please indicate that.)
                Hide
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                nfreese Nowlan Freese added a comment -

                The diagram is from the Chrome developer blog linked to in the description.

                Show
                nfreese Nowlan Freese added a comment - The diagram is from the Chrome developer blog linked to in the description.
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                nfreese Nowlan Freese added a comment - - edited

                Omkar Marne identified an issue in Firefox that caused the Galaxy data to be sent to IGB twice. I have created a fix and we have tested it on the bioviz test site.

                Pull request: https://bitbucket.org/lorainelab/bioviz/pull-requests/70/igbf-2987-fix-issue-in-firefox-where

                Show
                nfreese Nowlan Freese added a comment - - edited Omkar Marne identified an issue in Firefox that caused the Galaxy data to be sent to IGB twice. I have created a fix and we have tested it on the bioviz test site. Pull request: https://bitbucket.org/lorainelab/bioviz/pull-requests/70/igbf-2987-fix-issue-in-firefox-where
                Hide
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                ann.loraine Ann Loraine added a comment -

                PR is merged and deployed to BioViz.org main. Ready for testing.

                Show
                ann.loraine Ann Loraine added a comment - PR is merged and deployed to BioViz.org main. Ready for testing.
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                omarne Omkar Marne (Inactive) added a comment -

                Firebox bug that caused the Galaxy data to be sent to IGB twice has been resolved. Tested on chrome 95.0.4638.54 , firefox 94.0 and edge 95.0.1020.30. Data was loaded on IGB 9.1.10. Please check attached screenshots.

                Closing the ticket.

                Show
                omarne Omkar Marne (Inactive) added a comment - Firebox bug that caused the Galaxy data to be sent to IGB twice has been resolved. Tested on chrome 95.0.4638.54 , firefox 94.0 and edge 95.0.1020.30. Data was loaded on IGB 9.1.10. Please check attached screenshots. Closing the ticket.

                  People

                  • Assignee:
                    nfreese Nowlan Freese
                    Reporter:
                    nfreese Nowlan Freese
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    3 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: