Details
-
Type:
New Feature
-
Status: Closed (View Workflow)
-
Priority:
Major
-
Resolution: Done
-
Affects Version/s: None
-
Fix Version/s: None
-
Labels:None
-
Story Points:1
-
Epic Link:
-
Sprint:Fall 7 2021 Nov 8 - Nov 24, Fall 8 2021 Nov 29 - Dec 10, Fall 9 2021 Dec 13 - Dec 24
Description
A method for determining whether or not a UCSC genome name can be mapped to an IGB genome version is needed in order to decide which genome versions in the trackhub table UI can be made to have the option of utilizing IGB's 'open genome' endpoint located at http://localhost:7085/IGBControl?version=GENOME. Since this functionality may be needed in future services, an endpoint can be added to the trackhub facade API that returns the primary IGB genome version name corresponding to the provided UCSC genome version. This can be accomplished by searching the master synonyms.txt in an attempt to find an entry that matches the UCSC genome name. The first entry of the corresponding row would then be returned as the primary IGB genome version name.
It may be useful to extend IGB's endpoint to also include an 'species' query parameter, which could allow users to open converted trackhubs whose genome versions do not map to those associated with an IGB-supported organism.
