Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-3053

Investigate: M_musculus_Jun_2020 genome listed in Track Hubs table?

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          The new track hubs table available at https://www.bioviz.org/public-trackhubs.html lists an IGB name "M_musculus_Jun_2020" for a mouse genome version.

          However, this genome was not available in the IGB interface.

          I tried to visit the genome version by opening the Current Genome tab. I then selected species Mus musculus using the Species menu. However, the genome version name "M_musculus_Jun_2020" did not appear in the Genome Version menu.

          For this task, please investigate. Is there a problem with how the genome version names are getting picked up by the Table javascript code? Does a change need to be made in IGB? Do we need to add this genome version to the Quickload system?

            Attachments

              Issue Links

              relates to

              Updated Genome - After a genome has been updated and committed to SVN IGBF-3068 Enable DAS by default

              • Major - Major loss of function.
              • Closed

              Improvement - An improvement or enhancement to an existing feature or task. IGBF-781 Update synonyms.txt for UCSC

              • Major - Major loss of function.
              • Closed

                Activity

                Hide
                Permalink
                ann.loraine Ann Loraine added a comment -

                DAS needs to be enabled by default as this provides the most current and up-to-date genome versions. The "synonyms.txt" file contains a mapping for IGB genome version names and ucsc genome version names.

                Show
                ann.loraine Ann Loraine added a comment - DAS needs to be enabled by default as this provides the most current and up-to-date genome versions. The "synonyms.txt" file contains a mapping for IGB genome version names and ucsc genome version names.

                  People

                  • Assignee:
                    nfreese Nowlan Freese
                    Reporter:
                    ann.loraine Ann Loraine
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    1 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: