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  1. IGB
  2. IGBF-3068

Enable DAS by default

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          Description

          Modify IGB preferences configuration JSON file's data sources section to enable the DAS (Distributed Annotation Service) hosted at UCSC to be active by default in IGB.

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              Task - A task that needs to be done. IGBF-3053 Investigate: M_musculus_Jun_2020 genome listed in Track Hubs table?

              • Major - Major loss of function.
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                nfreese Nowlan Freese added a comment -

                I think the file is: igbDefaultPrefs.json

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                nfreese Nowlan Freese added a comment - I think the file is: igbDefaultPrefs.json
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                omarne Omkar Marne (Inactive) added a comment - - edited

                I removed the line ' status: disabled' to make the UCSC DAS data source enabled by default. It's working fine.

                Dr.[~aloraine] Please review the changes.

                https://bitbucket.org/omarne/integrated-genome-browser/commits/25ea823f342541bf201aa4a783ea5dd11ed4811d

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                omarne Omkar Marne (Inactive) added a comment - - edited I removed the line ' status: disabled' to make the UCSC DAS data source enabled by default. It's working fine. Dr. [~aloraine] Please review the changes. https://bitbucket.org/omarne/integrated-genome-browser/commits/25ea823f342541bf201aa4a783ea5dd11ed4811d
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                ann.loraine Ann Loraine added a comment -

                Looks fine. Please submit PR when ready.

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                ann.loraine Ann Loraine added a comment - Looks fine. Please submit PR when ready.
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                omarne Omkar Marne (Inactive) added a comment - - edited

                Dr. [~aloraine] Please find my PR - https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/896/igbf-3068-enable-das-data-source-by

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                omarne Omkar Marne (Inactive) added a comment - - edited Dr. [~aloraine] Please find my PR - https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/896/igbf-3068-enable-das-data-source-by
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                ann.loraine Ann Loraine added a comment - - edited

                Merged. Built master branch installers. Deployed master branch installers to early access IGB section on bioviz main site. Ready for testing.

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                ann.loraine Ann Loraine added a comment - - edited Merged. Built master branch installers. Deployed master branch installers to early access IGB section on bioviz main site. Ready for testing.
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                omarne Omkar Marne (Inactive) added a comment - - edited

                To test:

                • Please pull the latest changes in your IGB local environment.
                • Open IGB -> preferences -> data sources.
                • Set the preferences to default.
                • You'll see that the UCSC DAS data source is enabled by default. It was disabled by default before.
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                omarne Omkar Marne (Inactive) added a comment - - edited To test: Please pull the latest changes in your IGB local environment. Open IGB -> preferences -> data sources. Set the preferences to default. You'll see that the UCSC DAS data source is enabled by default. It was disabled by default before.
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                pbadzuh Philip Badzuh (Inactive) added a comment -

                Tested the changes, and everything looks good. Moving to done.

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                pbadzuh Philip Badzuh (Inactive) added a comment - Tested the changes, and everything looks good. Moving to done.

                  People

                  • Assignee:
                    omarne Omkar Marne (Inactive)
                    Reporter:
                    ann.loraine Ann Loraine
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                    • Created:
                      Updated:
                      Resolved: