Details
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Type:
Updated Genome
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: 9.1.10 Major Release
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Labels:None
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Story Points:0.25
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Epic Link:
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Sprint:Spring 2 2022 Jan 18 - Jan 28
Description
Modify IGB preferences configuration JSON file's data sources section to enable the DAS (Distributed Annotation Service) hosted at UCSC to be active by default in IGB.
Attachments
Issue Links
- relates to
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IGBF-3053 Investigate: M_musculus_Jun_2020 genome listed in Track Hubs table?
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- Closed
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-1765 [ 17855 ] |
| Description | Modify IGB preferences configuration to enable the DAS (Distributed Annotation Service) hosted at UCSC to be active by default in IGB. |
| Description | Modify IGB preferences configuration to enable the DAS (Distributed Annotation Service) hosted at UCSC to be active by default in IGB. | Modify IGB preferences configuration file's data sources section to enable the DAS (Distributed Annotation Service) hosted at UCSC to be active by default in IGB. |
| Description | Modify IGB preferences configuration file's data sources section to enable the DAS (Distributed Annotation Service) hosted at UCSC to be active by default in IGB. | Modify IGB preferences configuration JSON file's data sources section to enable the DAS (Distributed Annotation Service) hosted at UCSC to be active by default in IGB. |
| Assignee | Omkar Marne [ omarne ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Omkar Marne [ omarne ] | Ann Loraine [ aloraine ] |
I removed the line ' status: disabled' to make the UCSC DAS data source enabled by default. It's working fine.
Dr.[~aloraine] Please review the changes.
Looks fine. Please submit PR when ready.
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Assignee | Ann Loraine [ aloraine ] | Omkar Marne [ omarne ] |
Dr. [~aloraine] Please find my PR - https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/896/igbf-3068-enable-das-data-source-by
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Assignee | Omkar Marne [ omarne ] | Ann Loraine [ aloraine ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Assignee | Ann Loraine [ aloraine ] |
Merged. Built master branch installers. Deployed master branch installers to early access IGB section on bioviz main site. Ready for testing.
To test:
- Please pull the latest changes in your IGB local environment.
- Open IGB -> preferences -> data sources.
- Set the preferences to default.
- You'll see that the UCSC DAS data source is enabled by default. It was disabled by default before.
| Assignee | Philip Badzuh [ pbadzuh ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
Tested the changes, and everything looks good. Moving to done.
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Assignee | Philip Badzuh [ pbadzuh ] | Omkar Marne [ omarne ] |
| Fix Version/s | 9.1.10 Major Release [ 10700 ] |
| Issue Type | New Feature [ 2 ] | Updated Genome [ 11 ] |
I think the file is: igbDefaultPrefs.json