Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:0.5
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Epic Link:
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Sprint:Spring 3 2022 Jan 31 - Feb 11, Spring 4 2022 Feb 14 - Feb 25, Spring 5 2022 Feb 28 - Mar 11, Spring 6 2022 Mar 14 - Mar 25, Spring 7 2022 Mar 28 - Apr 8
Description
Karthik Raveendran has created a new Docker image containing deepTools, tabix (samtools), and a custom script he wrote to enable running of the image in CyVerse environment to compute a scaled coverage graph file (bedgraph format) and then tabix-index it.
He's run into some problems with getting the new image to run as wanted in the environment.
He will send a email asking about this to the CyVerse team and record the answers and insights obtained here.
Questions:
- How do I get access to the condor stderr and stdout ?
- How do I add metadata tags to my app even while it's in my private account and not yet widely available, i.e., "published"
This may be helpful:
IGB class information about using the IGB Docker image to build IGB:
https://canvas.instructure.com/courses/1164217/pages/learn-to-use-igb-docker-image-build-environment?module_item_id=43241015
Attachments
Issue Links
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- Closed
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