Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:0.5
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Epic Link:
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Sprint:Spring 9 2022 May 9, Summer 3 2022 June 21, Summer 4 2022 July 4
Description
I have created a new installer for IGB 9.1.8 using Install4J and a different JRE from what we were using previously.
Link to download the installer is here:
https://bitbucket.org/lorainelab/integrated-genome-browser/downloads/Zulu-IGB-windows-x64-9.1.8.exe
Important: Compare installer released via for Bioviz.org, which uses a different JDK and JRE
Compare as follows:
- installation process - does it work OK?
- Check that the installer claims it is installing version 9.1.8
- Also check that the version of IGB and its last commit are also 9.1.8 (should be from 9.1.8 release branch (BioViz.org installer should be one or more commits before that))
- Check save and opening. Please report any differences in file choosers widgets.
- Check for UI weirdness in Data Access Tab and Annotation Tab. These are using UI widgets from JideSoft, third party UI library. Elements that may cause a problem include menu's and color swatch interfaces. These may exhibit unusual behavior.
- Check that JavaFX aspects are OK. To test, open and use the IGB Apps Manager feature, available from the Tools menu in IGB.
- Open and inspect contents of the installation directory. Is there anything in this directory that was not in the previous generation installer?
Attachments
Issue Links
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-1765 [ 17855 ] |
| Summary | CLONE - Test Zulu Linux installer | Test Zulu Linux installer |
| Assignee | Ann Loraine [ aloraine ] |
| Summary | Test Zulu Linux installer | Test Zulu Windows x86 installer |
| Assignee | Ann Loraine [ aloraine ] |
| Assignee | Karthik Raveendran [ karthik ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Attachment | Screenshot 2022-05-18 131233.jpg [ 17231 ] |
| Attachment | Screenshot 2022-05-18 131233.jpg [ 17231 ] |
| Attachment | Reinstallation Error.jpg [ 17232 ] |
| Attachment | No JVM error.jpg [ 17233 ] |
The installer is supposed to place a JRE on the system for the "build" of IGB to run in. Maybe the configuration used caused that to not happen?
I tried installing IGB a few different ways.
- First, I purged all old JRE versions, kept the most recent version, and tried the Zulu installer. It wouldn't work but the older IGB installer worked.
- Then, I installed Java version 8 update 333 (latest) and ran both the installers: Zulu first and then the old one, and both worked.
- After that. I purged all Java versions and tried installing IGB with Zulu to see if a JRE is being placed. That did not work but it worked with the old installer
- I installed Java version 8 update 333 and the new installer worked.
I am not sure what you meant by configuration exactly but if it is Java config in my system, I purged everything and tested the installer as mentioned above and each time I purged the AppData as well just in case.
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Assignee | Karthik Raveendran [ karthik ] |
| Sprint | Spring 9 2022 May 9 [ 144 ] | Spring 9 2022 May 9, Summer 1 2022 May 23 [ 144, 147 ] |
| Rank | Ranked higher |
| Sprint | Spring 9 2022 May 9, Summer 1 2022 May 23 [ 144, 147 ] | Spring 9 2022 May 9 [ 144 ] |
| Sprint | Spring 9 2022 May 9 [ 144 ] | Spring 9 2022 May 9, Summer 2 2022 June 6 [ 144, 148 ] |
| Rank | Ranked higher |
| Sprint | Spring 9 2022 May 9, Summer 2 2022 June 6 [ 144, 148 ] | Spring 9 2022 May 9 [ 144 ] |
| Sprint | Spring 9 2022 May 9 [ 144 ] | Spring 9 2022 May 9, Summer 3 2022 June 21 [ 144, 149 ] |
| Description |
I have created a new installer for IGB 9.1.8 using Install4J and a different JRE from what we were using previously.
Link to download the installer is here: https://bitbucket.org/aloraine/integrated-genome-browser/downloads/Zulu-IGB-windows-x64-9.1.8.exe For this task, please test the installer and report on any issues with the following : * installation process - does it work OK? (compare to currently release installer for Bioviz.org) * general IGB functionality For general IGB functionality, be sure to check that the JavaFX aspects work. To test whether JavaFX aspects are working correctly, open and use the IGB Apps Manager feature, available from the Tools menu in IGB. |
I have created a new installer for IGB 9.1.8 using Install4J and a different JRE from what we were using previously.
Link to download the installer is here: https://bitbucket.org/lorainelab/integrated-genome-browser/downloads/Zulu-IGB-windows-x64-9.1.8.exe Important: Compare installer released via for Bioviz.org, which uses a different JDK and JRE Compare as follows: * installation process - does it work OK? * Version of IGB and last commit - should be from 9.1.8 release branch (BioViz.org installer should be one or more commits before that) * Check save and opening. Please report any differences in file choosers widgets. * Check for UI weirdness in Data Access Tab and Annotation Tab. These are using UI widgets from JideSoft, third party UI library. These may exhibit unusual behavior. * Check that JavaFX aspects are OK. To test, open and use the IGB Apps Manager feature, available from the Tools menu in IGB. |
Thank you for the feedback above.
I rebuilt installer using proper settings for Install4J. Please test again. Please note I revised the Description to provide more specifics on what and how to test.
| Description |
I have created a new installer for IGB 9.1.8 using Install4J and a different JRE from what we were using previously.
Link to download the installer is here: https://bitbucket.org/lorainelab/integrated-genome-browser/downloads/Zulu-IGB-windows-x64-9.1.8.exe Important: Compare installer released via for Bioviz.org, which uses a different JDK and JRE Compare as follows: * installation process - does it work OK? * Version of IGB and last commit - should be from 9.1.8 release branch (BioViz.org installer should be one or more commits before that) * Check save and opening. Please report any differences in file choosers widgets. * Check for UI weirdness in Data Access Tab and Annotation Tab. These are using UI widgets from JideSoft, third party UI library. These may exhibit unusual behavior. * Check that JavaFX aspects are OK. To test, open and use the IGB Apps Manager feature, available from the Tools menu in IGB. |
I have created a new installer for IGB 9.1.8 using Install4J and a different JRE from what we were using previously.
Link to download the installer is here: https://bitbucket.org/lorainelab/integrated-genome-browser/downloads/Zulu-IGB-windows-x64-9.1.8.exe Important: Compare installer released via for Bioviz.org, which uses a different JDK and JRE Compare as follows: * installation process - does it work OK? * Version of IGB and last commit - should be from 9.1.8 release branch (BioViz.org installer should be one or more commits before that) * Check save and opening. Please report any differences in file choosers widgets. * Check for UI weirdness in Data Access Tab and Annotation Tab. These are using UI widgets from JideSoft, third party UI library. Elements that may cause a problem include menu's and color swatch interfaces. These may exhibit unusual behavior. * Check that JavaFX aspects are OK. To test, open and use the IGB Apps Manager feature, available from the Tools menu in IGB. |
| Description |
I have created a new installer for IGB 9.1.8 using Install4J and a different JRE from what we were using previously.
Link to download the installer is here: https://bitbucket.org/lorainelab/integrated-genome-browser/downloads/Zulu-IGB-windows-x64-9.1.8.exe Important: Compare installer released via for Bioviz.org, which uses a different JDK and JRE Compare as follows: * installation process - does it work OK? * Version of IGB and last commit - should be from 9.1.8 release branch (BioViz.org installer should be one or more commits before that) * Check save and opening. Please report any differences in file choosers widgets. * Check for UI weirdness in Data Access Tab and Annotation Tab. These are using UI widgets from JideSoft, third party UI library. Elements that may cause a problem include menu's and color swatch interfaces. These may exhibit unusual behavior. * Check that JavaFX aspects are OK. To test, open and use the IGB Apps Manager feature, available from the Tools menu in IGB. |
I have created a new installer for IGB 9.1.8 using Install4J and a different JRE from what we were using previously.
Link to download the installer is here: https://bitbucket.org/lorainelab/integrated-genome-browser/downloads/Zulu-IGB-windows-x64-9.1.8.exe Important: Compare installer released via for Bioviz.org, which uses a different JDK and JRE Compare as follows: * installation process - does it work OK? * Check that the installer claims it is installing version 9.1.8 * Also check that the version of IGB and its last commit are also 9.1.8 (should be from 9.1.8 release branch (BioViz.org installer should be one or more commits before that)) * Check save and opening. Please report any differences in file choosers widgets. * Check for UI weirdness in Data Access Tab and Annotation Tab. These are using UI widgets from JideSoft, third party UI library. Elements that may cause a problem include menu's and color swatch interfaces. These may exhibit unusual behavior. * Check that JavaFX aspects are OK. To test, open and use the IGB Apps Manager feature, available from the Tools menu in IGB. |
| Assignee | Karthik Raveendran [ karthik ] |
Testing Results:
- The installer worked as intended
- The version installed is 9.1.8
- File chooser widgets work fine
- No UI weirdness in Data Access and Annotation tabs
Issue:
IGB App Manager install button does not seem to work. The app installs, however, through App Store.
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
Question for Karthik Raveendran: Does released (non-zulu) version of 9.1.8 have the same problem with installing of apps?
No, the release version of 9.1.8 does not have this issue.
- Moving ticket to first level review
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Karthik Raveendran [ karthik ] |
| Description |
I have created a new installer for IGB 9.1.8 using Install4J and a different JRE from what we were using previously.
Link to download the installer is here: https://bitbucket.org/lorainelab/integrated-genome-browser/downloads/Zulu-IGB-windows-x64-9.1.8.exe Important: Compare installer released via for Bioviz.org, which uses a different JDK and JRE Compare as follows: * installation process - does it work OK? * Check that the installer claims it is installing version 9.1.8 * Also check that the version of IGB and its last commit are also 9.1.8 (should be from 9.1.8 release branch (BioViz.org installer should be one or more commits before that)) * Check save and opening. Please report any differences in file choosers widgets. * Check for UI weirdness in Data Access Tab and Annotation Tab. These are using UI widgets from JideSoft, third party UI library. Elements that may cause a problem include menu's and color swatch interfaces. These may exhibit unusual behavior. * Check that JavaFX aspects are OK. To test, open and use the IGB Apps Manager feature, available from the Tools menu in IGB. |
I have created a new installer for IGB 9.1.8 using Install4J and a different JRE from what we were using previously.
Link to download the installer is here: https://bitbucket.org/lorainelab/integrated-genome-browser/downloads/Zulu-IGB-windows-x64-9.1.8.exe Important: Compare installer released via for Bioviz.org, which uses a different JDK and JRE Compare as follows: * installation process - does it work OK? * Check that the installer claims it is installing version 9.1.8 * Also check that the version of IGB and its last commit are also 9.1.8 (should be from 9.1.8 release branch (BioViz.org installer should be one or more commits before that)) * Check save and opening. Please report any differences in file choosers widgets. * Check for UI weirdness in Data Access Tab and Annotation Tab. These are using UI widgets from JideSoft, third party UI library. Elements that may cause a problem include menu's and color swatch interfaces. These may exhibit unusual behavior. * Check that JavaFX aspects are OK. To test, open and use the IGB Apps Manager feature, available from the Tools menu in IGB. * Open and inspect contents of the installation directory. Is there anything in this directory that was not in the previous generation installer? |
A question for Karthik Raveendran:
I just now noticed a problem with the MacOS installer in which the installer seems to add a directory of files called "bundles" to installation directory.
Did you observe the same thing with the Windows installer that you tested?
Also, please add a comment giving the location of the installation directory on the Windows system. Is it in the user's home directory, or somewhere else?
Note: I just now added testing this to the Description as another item in the bullet list of things to check.
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Assignee | Karthik Raveendran [ karthik ] |
Retested the installer:
- All steps had the same results as above comment.
- The installer worked as intended
- The version installed is 9.1.8
- File chooser widgets work fine
- No UI weirdness in Data Access and Annotation tabs
- Issue: IGB App Manager install button does not seem to work. The app installs, however, through App Store.
- Bundle directories are created in the installation directory during installation.
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Assignee | Karthik Raveendran [ karthik ] | Nowlan Freese [ nfreese ] |
| Status | First Level Review in Progress [ 10301 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Nowlan Freese [ nfreese ] | Karthik Raveendran [ karthik ] |
| Assignee | Karthik Raveendran [ karthik ] |
| Sprint | Spring 9 2022 May 9, Summer 3 2022 June 21 [ 144, 149 ] | Spring 9 2022 May 9, Summer 3 2022 June 21, Summer 4 2022 July 4 [ 144, 149, 150 ] |
| Rank | Ranked higher |
| Assignee | Ann Loraine [ aloraine ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Assignee | Ann Loraine [ aloraine ] | Karthik Raveendran [ karthik ] |
| Fix Version/s | 9.1.10 Major Release [ 10700 ] |
| Fix Version/s | 9.1.10 Major Release [ 10700 ] |
Upon initial installation of the Zulu Wx86 installer without uninstalling the previous version, the application installs (in a different folder) as expected and runs at the end of installation. But after uninstalling the application and reinstalling it, install4j could not find JRE on the system. Image of the error attached (Reinstallation Error.jpg). Whereas the reinstalling previous version (from bioviz,org) works fine.
Further testing is being done.