Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-3253

Submit Muday time course data to SRA

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          2
        • Epic Link:
        • Sprint:
          Spring 5 2023 Mar 6, Spring 6 2023 Mar 20, Spring 7 2023 Apr 10, Fall 2 2023 Sep 17

          Description

          Purpose:
          To prepare and submit the sequencing data to the SRA for the Muday144 data set.
          There are 144 total sequence files (72 pairs).

            Attachments

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-3498 Review SRA Submissions

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3415 Refer to the F3H over-expression line as VF36-T3 instead of OX3 or OE3

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                ann.loraine Ann Loraine created issue -
                ann.loraine Ann Loraine made changes -
                Field Original Value New Value
                Epic Link IGBF-2993 [ 21429 ]
                ann.loraine Ann Loraine made changes -
                Summary Submit mature pollen data to SRA Prepare for Submit mature pollen data to SRA
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 4 2023 Feb 21 [ 164 ] Spring 5 2023 Mar 6 [ 165 ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 5 2023 Mar 6 [ 165 ] Spring 5 2023 Mar 6, Spring 6 2023 Mar 20 [ 165, 166 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Summary Prepare for Submit mature pollen data to SRA Submit mature pollen data to SRA
                ann.loraine Ann Loraine made changes -
                Sprint Spring 5 2023 Mar 6, Spring 6 2023 Mar 20 [ 165, 166 ] Spring 5 2023 Mar 6, Spring 6 2023 Mar 20, Spring 7 2023 Apr 10 [ 165, 166, 167 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                Hide
                Permalink
                robofjoy Robert Reid added a comment -

                Sequence Read Archive (SRA) submission: SUB12365647

                Show
                robofjoy Robert Reid added a comment - Sequence Read Archive (SRA) submission: SUB12365647
                Hide
                Permalink
                robofjoy Robert Reid added a comment -

                Original GeneWiz ID = 30-716122143 (Summer 2022)
                This data is likely no longer there of course.

                Show
                robofjoy Robert Reid added a comment - Original GeneWiz ID = 30-716122143 (Summer 2022) This data is likely no longer there of course.
                Hide
                Permalink
                robofjoy Robert Reid added a comment -

                Setting the release data for July 1, 2024. (can change easily if desired).

                Show
                robofjoy Robert Reid added a comment - Setting the release data for July 1, 2024. (can change easily if desired).
                ann.loraine Ann Loraine made changes -
                Sprint Spring 5 2023 Mar 6, Spring 6 2023 Mar 20, Spring 7 2023 Apr 10 [ 165, 166, 167 ] Spring 5 2023 Mar 6, Spring 6 2023 Mar 20, Spring 7 2023 Apr 10, Spring 8 2023 Apr 24 [ 165, 166, 167, 168 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                robofjoy Robert Reid made changes -
                Assignee Robert Reid [ robertreid ]
                robofjoy Robert Reid made changes -
                Description Purpose:
                To prepare and submit the sequencing data to the SRA for the Muday144 data set.
                There are 144 total sequence files (72 pairs).

                Hide
                Permalink
                robofjoy Robert Reid added a comment -

                Note: for biosample, need to describe OX3 as "FLAVONOID 3-HYDROXYLASE (F3H)" .

                Need to describe ARE as _________ ? Need to find a proper name if already in literature.

                Show
                robofjoy Robert Reid added a comment - Note: for biosample, need to describe OX3 as "FLAVONOID 3-HYDROXYLASE (F3H)" . Need to describe ARE as _________ ? Need to find a proper name if already in literature.
                robofjoy Robert Reid made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                ann.loraine Ann Loraine made changes -
                Summary Submit mature pollen data to SRA Submit Muday time course data to SRA
                ann.loraine Ann Loraine made changes -
                Sprint Spring 5 2023 Mar 6, Spring 6 2023 Mar 20, Spring 7 2023 Apr 10, Spring 8 2023 Apr 24 [ 165, 166, 167, 168 ] Spring 5 2023 Mar 6, Spring 6 2023 Mar 20, Spring 7 2023 Apr 10 [ 165, 166, 167 ]
                robofjoy Robert Reid made changes -
                Attachment Apr13_BioSamplev2.pptx [ 17860 ]
                ann.loraine Ann Loraine made changes -
                Epic Link IGBF-2993 [ 21429 ] IGBF-3446 [ 22548 ]
                ann.loraine Ann Loraine made changes -
                Link This issue relates to IGBF-3415 [ IGBF-3415 ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 5 2023 Mar 6, Spring 6 2023 Mar 20, Spring 7 2023 Apr 10 [ 165, 166, 167 ] Spring 5 2023 Mar 6, Spring 6 2023 Mar 20, Spring 7 2023 Apr 10, Fall 2 2023 Sep 17 [ 165, 166, 167, 178 ]
                ann.loraine Ann Loraine made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                ann.loraine Ann Loraine made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                ann.loraine Ann Loraine made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                ann.loraine Ann Loraine made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                ann.loraine Ann Loraine made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                ann.loraine Ann Loraine made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                ann.loraine Ann Loraine made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                ann.loraine Ann Loraine made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                ann.loraine Ann Loraine made changes -
                Epic Link IGBF-3446 [ 22548 ] IGBF-2993 [ 21429 ]
                Mdavis4290 Molly Davis made changes -
                Link This issue relates to IGBF-3498 [ IGBF-3498 ]

                  People

                  • Assignee:
                    robofjoy Robert Reid
                    Reporter:
                    ann.loraine Ann Loraine
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    2 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: