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  1. IGB
  2. IGBF-3290

Use new sample labels recommended by Muday Lab

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          See attached.

          For this task, modify AddGeneAnnotations.Rmd to change labels as advised.

          A.34.15.8 is actually F.34.15.8 and vice versa
          A.28.30.8 is actually V.28.30.8 and vice versa
          A.34.45.8 is actually F.34.45.8 and vice versa
          A.28.75.8 is actually V.28.75.8 and vice versa

            Attachments

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-3303 Investigate: Distinguish F3H-OX3 from VF36 samples

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3333 Notify Muday lab about relabeled samples

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3596 Compare original Muday flavonoid data to SRA Re-run data

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3346 Prepping data and entries for SRA for Muday time course

              • Major - Major loss of function.
              • To-Do

                Activity

                Ascending order - Click to sort in descending order
                ann.loraine Ann Loraine created issue -
                ann.loraine Ann Loraine made changes -
                Field Original Value New Value
                Epic Link IGBF-3277 [ 22158 ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 5 2023 Mar 6 [ 165 ]
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Attachment sample-switching.pdf [ 17715 ]
                ann.loraine Ann Loraine made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                ann.loraine Ann Loraine made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                ann.loraine Ann Loraine made changes -
                Description See attached.

                For this task, modify AddGeneAnnotations.Rmd to change labels as advised.

                {quote}
                A.34.15.8 is actually F.34.15.8 and vice versa
                A.28.30.8 is actually V.28.30.8 and vice versa
                A.34.45.8 is actually F.34.45.8 and vice versa
                A.28.75.8 is actually V28.75.8 and vice versa
                {quote}                 		See attached.

                For this task, modify AddGeneAnnotations.Rmd to change labels as advised.

                {quote}
                A.34.15.8 is actually F.34.15.8 and vice versa
                A.28.30.8 is actually V.28.30.8 and vice versa
                A.34.45.8 is actually F.34.45.8 and vice versa
                A.28.75.8 is actually V.28.75.8 and vice versa
                {quote}
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                Mdavis4290 Molly Davis made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                Mdavis4290 Molly Davis made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                Mdavis4290 Molly Davis made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                Mdavis4290 Molly Davis made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                Mdavis4290 Molly Davis made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                Mdavis4290 Molly Davis made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                Mdavis4290 Molly Davis made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Link This issue relates to IGBF-3303 [ IGBF-3303 ]
                ann.loraine Ann Loraine made changes -
                Summary Address sample switching problem Use new sample labels recommended by Muday Lab
                ann.loraine Ann Loraine made changes -
                Resolution Done [ 10000 ]
                Status Closed [ 6 ] To-Do [ 10305 ]
                ann.loraine Ann Loraine made changes -
                Attachment 2023-04-17-SampleRelabelingSolved.pdf [ 17858 ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 5 2023 Mar 6 [ 165 ] Spring 5 2023 Mar 6, Spring 8 2023 Apr 24 [ 165, 168 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                robofjoy Robert Reid made changes -
                Attachment Azenta sample pictures with labels.pptx [ 17862 ]
                Attachment Muday lab RNA samples for sample name conversion.xls [ 17863 ]
                ann.loraine Ann Loraine made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Status In Progress [ 3 ] To-Do [ 10305 ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 5 2023 Mar 6, Spring 8 2023 Apr 24 [ 165, 168 ] Spring 5 2023 Mar 6, Spring 8 2023 Apr 24, Spring 9 2023 May 8 [ 165, 168, 169 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                ann.loraine Ann Loraine made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                ann.loraine Ann Loraine made changes -
                Status First Level Review in Progress [ 10301 ] To-Do [ 10305 ]
                ann.loraine Ann Loraine made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                ann.loraine Ann Loraine made changes -
                Comment [ Updating MDS plot code. ]
                ann.loraine Ann Loraine made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                Mdavis4290 Molly Davis made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                Mdavis4290 Molly Davis made changes -
                Link This issue relates to IGBF-3333 [ IGBF-3333 ]
                Mdavis4290 Molly Davis made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                Mdavis4290 Molly Davis made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                Mdavis4290 Molly Davis made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                Mdavis4290 Molly Davis made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                Mdavis4290 Molly Davis made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                Mdavis4290 Molly Davis made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                Mdavis4290 Molly Davis made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Link This issue relates to IGBF-3596 [ IGBF-3596 ]
                ann.loraine Ann Loraine made changes -
                Link This issue relates to IGBF-3346 [ IGBF-3346 ]

                  People

                  • Assignee:
                    ann.loraine Ann Loraine
                    Reporter:
                    ann.loraine Ann Loraine
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                    Dates

                    • Created:
                      Updated:
                      Resolved: