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  1. IGB
  2. IGBF-3346

Prepping data and entries for SRA for Muday time course

        Details

        • Type: Task
        • Status: To-Do (View Workflow)
        • Priority: Major
        • Resolution: Unresolved
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          2
        • Epic Link:
        • Sprint:
          Summer 2 2023 May 29, Summer 3 2023 June 12, Summer 6 2023 July 24, Summer 7 2023 Aug 7

          Description

          Starting the data prepping and table prepping for the Muday time course data.

          EXTRA step will be needed due to the labelling errors!!

          A script to rename the files will be needed and this script will need review to ensure we get that step right!

          Otherwise, the SRA submission should be straightforward, similar to IGBF-3255.

            Attachments

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-3406 Re-run Nextflow Muday time course data with SL5 data downloaded from SRA

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3290 Use new sample labels recommended by Muday Lab

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3596 Compare original Muday flavonoid data to SRA Re-run data

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                robofjoy Robert Reid created issue -
                robofjoy Robert Reid made changes -
                Field Original Value New Value
                Epic Link IGBF-2993 [ 21429 ]
                robofjoy Robert Reid made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                ann.loraine Ann Loraine made changes -
                Sprint Summer 2 2023 May 29 [ 171 ] Summer 2 2023 May 29, Summer 3 2023 June 12 [ 171, 172 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                robofjoy Robert Reid made changes -
                Summary Start prepping data and entries for SRA for Muday time course Prepping data and entries for SRA for Muday time course
                Description
                Starting the data prepping and table prepping for the Muday time course data.

                EXTRA step will be needed due to the labelling errors!!

                A script to rename the files will be needed and this script will need review to ensure we get that step right!

                Otherwise, the SRA submission should be straightforward, similar to IGBF-3255.                 		Starting the data prepping and table prepping for the Muday time course data.

                EXTRA step will be needed due to the labelling errors!!

                A script to rename the files will be needed and this script will need review to ensure we get that step right!

                Otherwise, the SRA submission should be straightforward, similar to IGBF-3255.
                robofjoy Robert Reid made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                Mdavis4290 Molly Davis made changes -
                Assignee Robert Reid [ robertreid ]
                ann.loraine Ann Loraine made changes -
                Sprint Summer 2 2023 May 29, Summer 3 2023 June 12 [ 171, 172 ] Summer 2 2023 May 29, Summer 3 2023 June 12, Summer 4 2023 June 26 [ 171, 172, 173 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Assignee Nowlan Freese [ nfreese ]
                ann.loraine Ann Loraine made changes -
                Sprint Summer 2 2023 May 29, Summer 3 2023 June 12, Summer 4 2023 June 26 [ 171, 172, 173 ] Summer 2 2023 May 29, Summer 3 2023 June 12, Summer 5 2023 July 10 [ 171, 172, 174 ]
                nfreese Nowlan Freese made changes -
                Sprint Summer 2 2023 May 29, Summer 3 2023 June 12, Summer 5 2023 July 10 [ 171, 172, 174 ] Summer 2 2023 May 29, Summer 3 2023 June 12, Summer 4 2023 June 26 [ 171, 172, 173 ]
                nfreese Nowlan Freese made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ] Robert Reid [ robertreid ]
                nfreese Nowlan Freese made changes -
                Status First Level Review in Progress [ 10301 ] To-Do [ 10305 ]
                robofjoy Robert Reid made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                robofjoy Robert Reid made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                robofjoy Robert Reid made changes -
                Assignee Robert Reid [ robertreid ] Molly Davis [ molly ]
                ann.loraine Ann Loraine made changes -
                Assignee Molly Davis [ molly ]
                ann.loraine Ann Loraine made changes -
                Sprint Summer 2 2023 May 29, Summer 3 2023 June 12, Summer 4 2023 June 26 [ 171, 172, 173 ] Summer 2 2023 May 29, Summer 3 2023 June 12, Summer 6 2023 July 24 [ 171, 172, 175 ]
                robofjoy Robert Reid made changes -
                Assignee Robert Reid [ robertreid ]
                robofjoy Robert Reid made changes -
                Assignee Robert Reid [ robertreid ] Nowlan Freese [ nfreese ]
                nfreese Nowlan Freese made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ] Robert Reid [ robertreid ]
                nfreese Nowlan Freese made changes -
                Status First Level Review in Progress [ 10301 ] To-Do [ 10305 ]
                robofjoy Robert Reid made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                robofjoy Robert Reid made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                robofjoy Robert Reid made changes -
                Assignee Robert Reid [ robertreid ] Nowlan Freese [ nfreese ]
                nfreese Nowlan Freese made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ] Robert Reid [ robertreid ]
                nfreese Nowlan Freese made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                ann.loraine Ann Loraine made changes -
                Sprint Summer 2 2023 May 29, Summer 3 2023 June 12, Summer 6 2023 July 24 [ 171, 172, 175 ] Summer 2 2023 May 29, Summer 3 2023 June 12, Summer 6 2023 July 24, Summer 7 2023 Aug 7 [ 171, 172, 175, 176 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                robofjoy Robert Reid made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                robofjoy Robert Reid made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                robofjoy Robert Reid made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                robofjoy Robert Reid made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                robofjoy Robert Reid made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                Mdavis4290 Molly Davis made changes -
                Link This issue relates to IGBF-3406 [ IGBF-3406 ]
                ann.loraine Ann Loraine made changes -
                Link This issue relates to IGBF-3290 [ IGBF-3290 ]
                robofjoy Robert Reid made changes -
                Resolution Done [ 10000 ]
                Status Closed [ 6 ] To-Do [ 10305 ]
                ann.loraine Ann Loraine made changes -
                Link This issue relates to IGBF-3596 [ IGBF-3596 ]

                  People

                  • Assignee:
                    robofjoy Robert Reid
                    Reporter:
                    robofjoy Robert Reid
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                    Dates

                    • Created:
                      Updated: