Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-3381

Investigate: ProtAnnot can no longer query InterProScan

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          I attempted to run a search of InterPro using ProtAnnot but the search did not execute properly. (See attached image for a view of ProtAnnot.)

          It looks like maybe the InterProScan Web service API has changed and ProtAnnot needs to be updated.

          Note:
          To understand how to run a search of InterPro using ProtAnnot, watch the video linked from the top page of https://apps.bioviz.org. The first part of the video explains how to install an IGB App using the App Store. You can skip the first part, since you probably should work with the development (current master branch) version of ProtAnnot available from the Downloads section of a ProtAnnot bitbucket repository. To just see how to run a search with ProtAnnot, you can skip ahead to 1:43 minutes into the video.

          The error, copied from IGB "log" tab:

          01:20:10.863 INFO com.affymetrix.igb.IGB - Completed loading sequence for Chr1 : 7,284,963 - 7,290,069 from IGB Quickload http://lorainelab-quickload.scidas.org/quickload/
          01:21:04.688 INFO o.l.i.p.i.InterProscanServiceRest - iprscan5-R20230710-072102-0693-74435734-p1m
          01:21:05.129 ERROR o.l.i.p.i.InterProscanServiceRest - No enum constant org.lorainelab.igb.protannot.interproscan.api.InterProscanService.Status.QUEUED
          java.lang.IllegalArgumentException: No enum constant org.lorainelab.igb.protannot.interproscan.api.InterProscanService.Status.QUEUED
          at java.lang.Enum.valueOf(Enum.java:238) ~[na:1.8.0_332]
          at org.lorainelab.igb.protannot.interproscan.api.InterProscanService$Status.valueOf(InterProscanService.java:29) ~[-1688969961404:na]
          at org.lorainelab.igb.protannot.interproscan.InterProscanServiceRest.status(InterProscanServiceRest.java:106) ~[-1688969961404:na]
          at org.lorainelab.igb.protannot.ProtAnnotService$5.run(ProtAnnotService.java:692) [-1688969961404:na]
          at java.util.TimerThread.mainLoop(Timer.java:555) [na:1.8.0_332]
          at java.util.TimerThread.run(Timer.java:505) [na:1.8.0_332]
          01:21:05.130 INFO o.l.igb.protannot.ProtAnnotService - iprscan5-R20230710-072102-0693-74435734-p1m Error

          For this task, determine if this error re-occurs in other searches.

          For your reference, one gene model searched. The gene model was "AT1G20920.7" from the "Araport" track of Arabidopsis genome version A_thaliana_Jun_2009.

          I discovered the error during final testing of IGBF-3202.

            Attachments

              Issue Links

              blocks

              Task - A task that needs to be done. IGBF-3380 Deploy ProtAnnot 9.1.4 to App Store.

              • Major - Major loss of function.
              • Closed
              relates to

              Task - A task that needs to be done. IGBF-3349 Remove guava (google) upper bound version requirement for ProtAnnot

              • Blocker - Blocks development and/or testing work, production could not run.
              • Closed

                Activity

                Descending order - Click to sort in ascending order
                ann.loraine Ann Loraine made changes -
                Link This issue relates to IGBF-3349 [ IGBF-3349 ]
                nfreese Nowlan Freese made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ] Kaushik Gopu [ kgopu ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ]
                nfreese Nowlan Freese made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                ann.loraine Ann Loraine made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                nfreese Nowlan Freese made changes -
                Assignee Kaushik Gopu [ kgopu ] Ann Loraine [ aloraine ]
                nfreese Nowlan Freese made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ] Kaushik Gopu [ kgopu ]
                nfreese Nowlan Freese made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                nfreese Nowlan Freese made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                nfreese Nowlan Freese made changes -
                Assignee Kaushik Gopu [ kgopu ] Nowlan Freese [ nfreese ]
                nfreese Nowlan Freese made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ] Kaushik Gopu [ kgopu ]
                ann.loraine Ann Loraine made changes -
                Status First Level Review in Progress [ 10301 ] To-Do [ 10305 ]
                ann.loraine Ann Loraine made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                ann.loraine Ann Loraine made changes -
                Assignee Kaushik Gopu [ kgopu ] Ann Loraine [ aloraine ]
                kgopu Kaushik Gopu made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                ann.loraine Ann Loraine made changes -
                Attachment Dscam1.png [ 17915 ]
                nfreese Nowlan Freese made changes -
                Assignee Kaushik Gopu [ kgopu ]
                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                ann.loraine Ann Loraine made changes -
                Description I attempted to run a search of InterPro using ProtAnnot but the search did not execute properly. (See attached image for a view of ProtAnnot.)

                It looks like maybe the InterProScan Web service API has changed and ProtAnnot needs to be updated.

                Note:
                To understand how to run a search of InterPro using ProtAnnot, watch the video linked from the top page of https://apps.bioviz.org. The first part of the video explains how to install an IGB App using the App Store. You can skip the first part, since you probably should work with the development (current master branch) version of ProtAnnot available from the Downloads section of a ProtAnnot bitbucket repository. To just see how to run a search with ProtAnnot, you can skip ahead to 1:43 minutes into the video.

                The error:

                {quote}
                01:20:10.863 INFO com.affymetrix.igb.IGB - Completed loading sequence for Chr1 : 7,284,963 - 7,290,069 from IGB Quickload http://lorainelab-quickload.scidas.org/quickload/
                01:21:04.688 INFO o.l.i.p.i.InterProscanServiceRest - iprscan5-R20230710-072102-0693-74435734-p1m
                01:21:05.129 ERROR o.l.i.p.i.InterProscanServiceRest - No enum constant org.lorainelab.igb.protannot.interproscan.api.InterProscanService.Status.QUEUED
                java.lang.IllegalArgumentException: No enum constant org.lorainelab.igb.protannot.interproscan.api.InterProscanService.Status.QUEUED
                at java.lang.Enum.valueOf(Enum.java:238) ~[na:1.8.0_332]
                at org.lorainelab.igb.protannot.interproscan.api.InterProscanService$Status.valueOf(InterProscanService.java:29) ~[-1688969961404:na]
                at org.lorainelab.igb.protannot.interproscan.InterProscanServiceRest.status(InterProscanServiceRest.java:106) ~[-1688969961404:na]
                at org.lorainelab.igb.protannot.ProtAnnotService$5.run(ProtAnnotService.java:692) [-1688969961404:na]
                at java.util.TimerThread.mainLoop(Timer.java:555) [na:1.8.0_332]
                at java.util.TimerThread.run(Timer.java:505) [na:1.8.0_332]
                01:21:05.130 INFO o.l.igb.protannot.ProtAnnotService - iprscan5-R20230710-072102-0693-74435734-p1m Error
                {quote}

                For this task, determine if this error re-occurs in other searches.

                For your reference, one gene model searched. The gene model was "AT1G20920.7" from the "Araport" track of Arabidopsis genome version A_thaliana_Jun_2009.

                I discovered the error during final testing of IGBF-3202.                 		I attempted to run a search of InterPro using ProtAnnot but the search did not execute properly. (See attached image for a view of ProtAnnot.)

                It looks like maybe the InterProScan Web service API has changed and ProtAnnot needs to be updated.

                Note:
                To understand how to run a search of InterPro using ProtAnnot, watch the video linked from the top page of https://apps.bioviz.org. The first part of the video explains how to install an IGB App using the App Store. You can skip the first part, since you probably should work with the development (current master branch) version of ProtAnnot available from the Downloads section of a ProtAnnot bitbucket repository. To just see how to run a search with ProtAnnot, you can skip ahead to 1:43 minutes into the video.

                The error, copied from IGB "log" tab:

                {quote}
                01:20:10.863 INFO com.affymetrix.igb.IGB - Completed loading sequence for Chr1 : 7,284,963 - 7,290,069 from IGB Quickload http://lorainelab-quickload.scidas.org/quickload/
                01:21:04.688 INFO o.l.i.p.i.InterProscanServiceRest - iprscan5-R20230710-072102-0693-74435734-p1m
                01:21:05.129 ERROR o.l.i.p.i.InterProscanServiceRest - No enum constant org.lorainelab.igb.protannot.interproscan.api.InterProscanService.Status.QUEUED
                java.lang.IllegalArgumentException: No enum constant org.lorainelab.igb.protannot.interproscan.api.InterProscanService.Status.QUEUED
                at java.lang.Enum.valueOf(Enum.java:238) ~[na:1.8.0_332]
                at org.lorainelab.igb.protannot.interproscan.api.InterProscanService$Status.valueOf(InterProscanService.java:29) ~[-1688969961404:na]
                at org.lorainelab.igb.protannot.interproscan.InterProscanServiceRest.status(InterProscanServiceRest.java:106) ~[-1688969961404:na]
                at org.lorainelab.igb.protannot.ProtAnnotService$5.run(ProtAnnotService.java:692) [-1688969961404:na]
                at java.util.TimerThread.mainLoop(Timer.java:555) [na:1.8.0_332]
                at java.util.TimerThread.run(Timer.java:505) [na:1.8.0_332]
                01:21:05.130 INFO o.l.igb.protannot.ProtAnnotService - iprscan5-R20230710-072102-0693-74435734-p1m Error
                {quote}

                For this task, determine if this error re-occurs in other searches.

                For your reference, one gene model searched. The gene model was "AT1G20920.7" from the "Araport" track of Arabidopsis genome version A_thaliana_Jun_2009.

                I discovered the error during final testing of IGBF-3202.
                ann.loraine Ann Loraine made changes -
                Description I attempted to run a search of InterPro using ProtAnnot but the search did not execute properly.

                It looks like maybe the InterProScan Web service API has changed and ProtAnnot needs to be updated.

                Note:
                To understand how to run a search of InterPro using ProtAnnot, watch the video linked from the top page of https://apps.bioviz.org. The first part of the video explains how to install an IGB App using the App Store. You can skip the first part, since you probably should work with the development (current master branch) version of ProtAnnot available from the Downloads section of a ProtAnnot bitbucket repository. To just see how to run a search with ProtAnnot, you can skip ahead to 1:43 minutes into the video.

                The error:

                {quote}
                01:20:10.863 INFO com.affymetrix.igb.IGB - Completed loading sequence for Chr1 : 7,284,963 - 7,290,069 from IGB Quickload http://lorainelab-quickload.scidas.org/quickload/
                01:21:04.688 INFO o.l.i.p.i.InterProscanServiceRest - iprscan5-R20230710-072102-0693-74435734-p1m
                01:21:05.129 ERROR o.l.i.p.i.InterProscanServiceRest - No enum constant org.lorainelab.igb.protannot.interproscan.api.InterProscanService.Status.QUEUED
                java.lang.IllegalArgumentException: No enum constant org.lorainelab.igb.protannot.interproscan.api.InterProscanService.Status.QUEUED
                at java.lang.Enum.valueOf(Enum.java:238) ~[na:1.8.0_332]
                at org.lorainelab.igb.protannot.interproscan.api.InterProscanService$Status.valueOf(InterProscanService.java:29) ~[-1688969961404:na]
                at org.lorainelab.igb.protannot.interproscan.InterProscanServiceRest.status(InterProscanServiceRest.java:106) ~[-1688969961404:na]
                at org.lorainelab.igb.protannot.ProtAnnotService$5.run(ProtAnnotService.java:692) [-1688969961404:na]
                at java.util.TimerThread.mainLoop(Timer.java:555) [na:1.8.0_332]
                at java.util.TimerThread.run(Timer.java:505) [na:1.8.0_332]
                01:21:05.130 INFO o.l.igb.protannot.ProtAnnotService - iprscan5-R20230710-072102-0693-74435734-p1m Error
                {quote}

                For this task, determine if this error re-occurs in other searches.

                For your reference, one gene model searched. The gene model was "AT1G20920.7" from the "Araport" track of Arabidopsis genome version A_thaliana_Jun_2009.

                I discovered the error during final testing of IGBF-3202.                 		I attempted to run a search of InterPro using ProtAnnot but the search did not execute properly. (See attached image for a view of ProtAnnot.)

                It looks like maybe the InterProScan Web service API has changed and ProtAnnot needs to be updated.

                Note:
                To understand how to run a search of InterPro using ProtAnnot, watch the video linked from the top page of https://apps.bioviz.org. The first part of the video explains how to install an IGB App using the App Store. You can skip the first part, since you probably should work with the development (current master branch) version of ProtAnnot available from the Downloads section of a ProtAnnot bitbucket repository. To just see how to run a search with ProtAnnot, you can skip ahead to 1:43 minutes into the video.

                The error:

                {quote}
                01:20:10.863 INFO com.affymetrix.igb.IGB - Completed loading sequence for Chr1 : 7,284,963 - 7,290,069 from IGB Quickload http://lorainelab-quickload.scidas.org/quickload/
                01:21:04.688 INFO o.l.i.p.i.InterProscanServiceRest - iprscan5-R20230710-072102-0693-74435734-p1m
                01:21:05.129 ERROR o.l.i.p.i.InterProscanServiceRest - No enum constant org.lorainelab.igb.protannot.interproscan.api.InterProscanService.Status.QUEUED
                java.lang.IllegalArgumentException: No enum constant org.lorainelab.igb.protannot.interproscan.api.InterProscanService.Status.QUEUED
                at java.lang.Enum.valueOf(Enum.java:238) ~[na:1.8.0_332]
                at org.lorainelab.igb.protannot.interproscan.api.InterProscanService$Status.valueOf(InterProscanService.java:29) ~[-1688969961404:na]
                at org.lorainelab.igb.protannot.interproscan.InterProscanServiceRest.status(InterProscanServiceRest.java:106) ~[-1688969961404:na]
                at org.lorainelab.igb.protannot.ProtAnnotService$5.run(ProtAnnotService.java:692) [-1688969961404:na]
                at java.util.TimerThread.mainLoop(Timer.java:555) [na:1.8.0_332]
                at java.util.TimerThread.run(Timer.java:505) [na:1.8.0_332]
                01:21:05.130 INFO o.l.igb.protannot.ProtAnnotService - iprscan5-R20230710-072102-0693-74435734-p1m Error
                {quote}

                For this task, determine if this error re-occurs in other searches.

                For your reference, one gene model searched. The gene model was "AT1G20920.7" from the "Araport" track of Arabidopsis genome version A_thaliana_Jun_2009.

                I discovered the error during final testing of IGBF-3202.
                ann.loraine Ann Loraine made changes -
                Description I attempted to run a search of InterPro using ProtAnnot but the search did not execute properly.

                Note:
                To understand how to run a search of InterPro using ProtAnnot, watch the video linked from the top page of https://apps.bioviz.org. The first part of the video explains how to install an IGB App using the App Store. You can skip the first part, since you probably should work with the development (current master branch) version of ProtAnnot available from the Downloads section of a ProtAnnot bitbucket repository. To just see how to run a search with ProtAnnot, you can skip ahead to 1:43 minutes into the video.

                It looks like maybe the InterProScan Web service API has changed and ProtAnnot needs to be updated.

                The error:

                {quote}
                01:20:10.863 INFO com.affymetrix.igb.IGB - Completed loading sequence for Chr1 : 7,284,963 - 7,290,069 from IGB Quickload http://lorainelab-quickload.scidas.org/quickload/
                01:21:04.688 INFO o.l.i.p.i.InterProscanServiceRest - iprscan5-R20230710-072102-0693-74435734-p1m
                01:21:05.129 ERROR o.l.i.p.i.InterProscanServiceRest - No enum constant org.lorainelab.igb.protannot.interproscan.api.InterProscanService.Status.QUEUED
                java.lang.IllegalArgumentException: No enum constant org.lorainelab.igb.protannot.interproscan.api.InterProscanService.Status.QUEUED
                at java.lang.Enum.valueOf(Enum.java:238) ~[na:1.8.0_332]
                at org.lorainelab.igb.protannot.interproscan.api.InterProscanService$Status.valueOf(InterProscanService.java:29) ~[-1688969961404:na]
                at org.lorainelab.igb.protannot.interproscan.InterProscanServiceRest.status(InterProscanServiceRest.java:106) ~[-1688969961404:na]
                at org.lorainelab.igb.protannot.ProtAnnotService$5.run(ProtAnnotService.java:692) [-1688969961404:na]
                at java.util.TimerThread.mainLoop(Timer.java:555) [na:1.8.0_332]
                at java.util.TimerThread.run(Timer.java:505) [na:1.8.0_332]
                01:21:05.130 INFO o.l.igb.protannot.ProtAnnotService - iprscan5-R20230710-072102-0693-74435734-p1m Error
                {quote}

                For this task, determine if this error re-occurs in other searches.

                For your reference, one gene model searched. The gene model was "AT1G20920.7" from the "Araport" track of Arabidopsis genome version A_thaliana_Jun_2009.

                I discovered the error during final testing of IGBF-3202.                 		I attempted to run a search of InterPro using ProtAnnot but the search did not execute properly.

                It looks like maybe the InterProScan Web service API has changed and ProtAnnot needs to be updated.

                Note:
                To understand how to run a search of InterPro using ProtAnnot, watch the video linked from the top page of https://apps.bioviz.org. The first part of the video explains how to install an IGB App using the App Store. You can skip the first part, since you probably should work with the development (current master branch) version of ProtAnnot available from the Downloads section of a ProtAnnot bitbucket repository. To just see how to run a search with ProtAnnot, you can skip ahead to 1:43 minutes into the video.

                The error:

                {quote}
                01:20:10.863 INFO com.affymetrix.igb.IGB - Completed loading sequence for Chr1 : 7,284,963 - 7,290,069 from IGB Quickload http://lorainelab-quickload.scidas.org/quickload/
                01:21:04.688 INFO o.l.i.p.i.InterProscanServiceRest - iprscan5-R20230710-072102-0693-74435734-p1m
                01:21:05.129 ERROR o.l.i.p.i.InterProscanServiceRest - No enum constant org.lorainelab.igb.protannot.interproscan.api.InterProscanService.Status.QUEUED
                java.lang.IllegalArgumentException: No enum constant org.lorainelab.igb.protannot.interproscan.api.InterProscanService.Status.QUEUED
                at java.lang.Enum.valueOf(Enum.java:238) ~[na:1.8.0_332]
                at org.lorainelab.igb.protannot.interproscan.api.InterProscanService$Status.valueOf(InterProscanService.java:29) ~[-1688969961404:na]
                at org.lorainelab.igb.protannot.interproscan.InterProscanServiceRest.status(InterProscanServiceRest.java:106) ~[-1688969961404:na]
                at org.lorainelab.igb.protannot.ProtAnnotService$5.run(ProtAnnotService.java:692) [-1688969961404:na]
                at java.util.TimerThread.mainLoop(Timer.java:555) [na:1.8.0_332]
                at java.util.TimerThread.run(Timer.java:505) [na:1.8.0_332]
                01:21:05.130 INFO o.l.igb.protannot.ProtAnnotService - iprscan5-R20230710-072102-0693-74435734-p1m Error
                {quote}

                For this task, determine if this error re-occurs in other searches.

                For your reference, one gene model searched. The gene model was "AT1G20920.7" from the "Araport" track of Arabidopsis genome version A_thaliana_Jun_2009.

                I discovered the error during final testing of IGBF-3202.
                ann.loraine Ann Loraine made changes -
                Description I attempted to run a search of InterPro using ProtAnnot but the search did not execute properly.

                It looks like maybe the InterProScan Web service API has changed and ProtAnnot needs to be updated.

                The error:

                {quote}
                01:20:10.863 INFO com.affymetrix.igb.IGB - Completed loading sequence for Chr1 : 7,284,963 - 7,290,069 from IGB Quickload http://lorainelab-quickload.scidas.org/quickload/
                01:21:04.688 INFO o.l.i.p.i.InterProscanServiceRest - iprscan5-R20230710-072102-0693-74435734-p1m
                01:21:05.129 ERROR o.l.i.p.i.InterProscanServiceRest - No enum constant org.lorainelab.igb.protannot.interproscan.api.InterProscanService.Status.QUEUED
                java.lang.IllegalArgumentException: No enum constant org.lorainelab.igb.protannot.interproscan.api.InterProscanService.Status.QUEUED
                at java.lang.Enum.valueOf(Enum.java:238) ~[na:1.8.0_332]
                at org.lorainelab.igb.protannot.interproscan.api.InterProscanService$Status.valueOf(InterProscanService.java:29) ~[-1688969961404:na]
                at org.lorainelab.igb.protannot.interproscan.InterProscanServiceRest.status(InterProscanServiceRest.java:106) ~[-1688969961404:na]
                at org.lorainelab.igb.protannot.ProtAnnotService$5.run(ProtAnnotService.java:692) [-1688969961404:na]
                at java.util.TimerThread.mainLoop(Timer.java:555) [na:1.8.0_332]
                at java.util.TimerThread.run(Timer.java:505) [na:1.8.0_332]
                01:21:05.130 INFO o.l.igb.protannot.ProtAnnotService - iprscan5-R20230710-072102-0693-74435734-p1m Error
                {quote}

                For this task, determine if this error re-occurs in other searches.

                For your reference, one gene model searched. The gene model was "AT1G20920.7" from the "Araport" track of Arabidopsis genome version A_thaliana_Jun_2009.

                I discovered the error during final testing of IGBF-3202.                 		I attempted to run a search of InterPro using ProtAnnot but the search did not execute properly.

                Note:
                To understand how to run a search of InterPro using ProtAnnot, watch the video linked from the top page of https://apps.bioviz.org. The first part of the video explains how to install an IGB App using the App Store. You can skip the first part, since you probably should work with the development (current master branch) version of ProtAnnot available from the Downloads section of a ProtAnnot bitbucket repository. To just see how to run a search with ProtAnnot, you can skip ahead to 1:43 minutes into the video.

                It looks like maybe the InterProScan Web service API has changed and ProtAnnot needs to be updated.

                The error:

                {quote}
                01:20:10.863 INFO com.affymetrix.igb.IGB - Completed loading sequence for Chr1 : 7,284,963 - 7,290,069 from IGB Quickload http://lorainelab-quickload.scidas.org/quickload/
                01:21:04.688 INFO o.l.i.p.i.InterProscanServiceRest - iprscan5-R20230710-072102-0693-74435734-p1m
                01:21:05.129 ERROR o.l.i.p.i.InterProscanServiceRest - No enum constant org.lorainelab.igb.protannot.interproscan.api.InterProscanService.Status.QUEUED
                java.lang.IllegalArgumentException: No enum constant org.lorainelab.igb.protannot.interproscan.api.InterProscanService.Status.QUEUED
                at java.lang.Enum.valueOf(Enum.java:238) ~[na:1.8.0_332]
                at org.lorainelab.igb.protannot.interproscan.api.InterProscanService$Status.valueOf(InterProscanService.java:29) ~[-1688969961404:na]
                at org.lorainelab.igb.protannot.interproscan.InterProscanServiceRest.status(InterProscanServiceRest.java:106) ~[-1688969961404:na]
                at org.lorainelab.igb.protannot.ProtAnnotService$5.run(ProtAnnotService.java:692) [-1688969961404:na]
                at java.util.TimerThread.mainLoop(Timer.java:555) [na:1.8.0_332]
                at java.util.TimerThread.run(Timer.java:505) [na:1.8.0_332]
                01:21:05.130 INFO o.l.igb.protannot.ProtAnnotService - iprscan5-R20230710-072102-0693-74435734-p1m Error
                {quote}

                For this task, determine if this error re-occurs in other searches.

                For your reference, one gene model searched. The gene model was "AT1G20920.7" from the "Araport" track of Arabidopsis genome version A_thaliana_Jun_2009.

                I discovered the error during final testing of IGBF-3202.
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Link This issue blocks IGBF-3380 [ IGBF-3380 ]
                ann.loraine Ann Loraine made changes -
                Field Original Value New Value
                Epic Link IGBF-1908 [ 17998 ]
                ann.loraine Ann Loraine created issue -

                  People

                  • Assignee:
                    kgopu Kaushik Gopu
                    Reporter:
                    ann.loraine Ann Loraine
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    3 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: