Details
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Type: Task
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Status: Closed (View Workflow)
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Priority: Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Epic Link:
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Sprint:Fall 5
Description
Steps to reproduce:
- Fork/Clone the repository https://bitbucket.org/lorainelab/ncbi-primer/src/master/.
- Try to run a pipeline for the forked repo master branch or build the cloned repo locally.
- You can see a test case failure
Attachments
Issue Links
- relates to
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IGBF-2319 Improve Primer Options tab - minor changes
- Closed
Activity
Jaya Sravani Sirigineedi
created issue -
Jaya Sravani Sirigineedi
made changes -
Jaya Sravani Sirigineedi
made changes -
Assignee | Ann Loraine [ aloraine ] |
Nowlan Freese
made changes -
Epic Link | IGBF-1765 [ 17855 ] |
Nowlan Freese
made changes -
Sprint | Fall 5 [ 181 ] |
Jaya Sravani Sirigineedi
made changes -
Assignee | Jaya Sravani Sirigineedi [ jsirigin ] |
Jaya Sravani Sirigineedi
made changes -
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Jaya Sravani Sirigineedi
made changes -
Attachment | Screenshot 2023-11-03 at 9.31.52 AM.png [ 18078 ] |
Jaya Sravani Sirigineedi
made changes -
Assignee | Jaya Sravani Sirigineedi [ jsirigin ] |
Jaya Sravani Sirigineedi
made changes -
Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Nowlan Freese
made changes -
Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Nowlan Freese
made changes -
Status | First Level Review in Progress [ 10301 ] | Needs 1st Level Review [ 10005 ] |
Nowlan Freese
made changes -
Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Nowlan Freese
made changes -
Assignee | Nowlan Freese [ nfreese ] |
Nowlan Freese
made changes -
Assignee | Nowlan Freese [ nfreese ] | Jaya Sravani Sirigineedi [ jsirigin ] |
Nowlan Freese
made changes -
Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
Jaya Sravani Sirigineedi
made changes -
Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
Jaya Sravani Sirigineedi
made changes -
Assignee | Jaya Sravani Sirigineedi [ jsirigin ] |
Ann Loraine
made changes -
Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
Ann Loraine
made changes -
Assignee | Ann Loraine [ aloraine ] |
Ann Loraine
made changes -
Status | Reviewing Pull Request [ 10303 ] | To-Do [ 10305 ] |
Ann Loraine
made changes -
Assignee | Ann Loraine [ aloraine ] | Jaya Sravani Sirigineedi [ jsirigin ] |
Jaya Sravani Sirigineedi
made changes -
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Jaya Sravani Sirigineedi
made changes -
Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Jaya Sravani Sirigineedi
made changes -
Assignee | Jaya Sravani Sirigineedi [ jsirigin ] |
Ann Loraine
made changes -
Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Ann Loraine
made changes -
Status | First Level Review in Progress [ 10301 ] | Needs 1st Level Review [ 10005 ] |
Ann Loraine
made changes -
Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Ann Loraine
made changes -
Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
Ann Loraine
made changes -
Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
Ann Loraine
made changes -
Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
Ann Loraine
made changes -
Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
Ann Loraine
made changes -
Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
Ann Loraine
made changes -
Resolution | Done [ 10000 ] | |
Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
Ann Loraine
made changes -
Assignee | Jaya Sravani Sirigineedi [ jsirigin ] |
When I was investigating I found out that the test case which is expecting to give an error when selecting "Arabidopsis thaliana" is written because of this https://jira.bioviz.org/browse/IGBF-2287?focusedCommentId=27078&page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel#comment-27078 as there is an expectation for this database to work only for few species. But when I debug the test case, I found out that the NCBI primer is giving a response when this organism is selected. [~aloraine] Should it give an error for this particular one? Also, I tried this in the NCBI primer website using the primer blast tool to do the primer calculation through the website and it worked for this organism. Below is the results screenshot.