Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Epic Link:
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Sprint:Fall 5
Description
Steps to reproduce:
- Fork/Clone the repository https://bitbucket.org/lorainelab/ncbi-primer/src/master/.
- Try to run a pipeline for the forked repo master branch or build the cloned repo locally.
- You can see a test case failure
Attachments
Issue Links
- relates to
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IGBF-2319 Improve Primer Options tab - minor changes
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- Closed
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When I was investigating I found out that the test case which is expecting to give an error when selecting "Arabidopsis thaliana" is written because of this https://jira.bioviz.org/browse/IGBF-2287?focusedCommentId=27078&page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel#comment-27078 as there is an expectation for this database to work only for few species. But when I debug the test case, I found out that the NCBI primer is giving a response when this organism is selected. [~aloraine] Should it give an error for this particular one? Also, I tried this in the NCBI primer website using the primer blast tool to do the primer calculation through the website and it worked for this organism. Below is the results screenshot.