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  1. IGB
  2. IGBF-3521

Investigate build problem: effective model for org.lorainelab.igb:affymetrix-common:bundle:10.0.0

        Details

          Description

          Building main-JDK21 version generated this warning:

          [WARNING] 
[WARNING] Some problems were encountered while building the effective model for org.lorainelab.igb:affymetrix-common:bundle:10.0.0
[WARNING] 'dependencies.dependency.(groupId:artifactId:type:classifier)' must be unique: org.slf4j:slf4j-api:jar -> duplicate declaration of version (?) @ line 58, column 21
[WARNING] 
[WARNING] It is highly recommended to fix these problems because they threaten the stability of your build.
[WARNING]

          For this task, investigate and correct the problem that is causing the warning.

          main-JDK21 version:

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              Issue Links

              relates to

              Bug - A problem which impairs or prevents the functions of the product. IGBF-3522 Investigate build problem: unknown parameter ignoreChecksumFailure

              • Major - Major loss of function.
              • Closed

              Bug - A problem which impairs or prevents the functions of the product. IGBF-3525 Investigate build problem: SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder"

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3523 Investigate build problem: POM and checksum for com.jidesoft:jide-ultimate-jakarta:jar:3.5.15 is missing, no dependency information available

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3524 Investigate build problem: Bundle org.lorainelab.igb:flatlaf:bundle:10.0.0 : Classes found in the wrong directory

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3508 Create Install4J v10 Docker image for JDK21

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3516 Investigate build problem: repo1/javax/jlfgr/jlfgr/1.0/jlfgr-1.0.jar main-JDK21 warning

              • Major - Major loss of function.
              • Closed

                Activity

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                karthik Karthik Raveendran added a comment - - edited

                The above warning was shown because the slf4j-api dependency was declared twice in affymetrix-common. Removed one of them and the warning is gone with no new issues. See commit

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                karthik Karthik Raveendran added a comment - - edited The above warning was shown because the slf4j-api dependency was declared twice in affymetrix-common. Removed one of them and the warning is gone with no new issues. See commit
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                nfreese Nowlan Freese added a comment -

                Tested locally. IGB is working and the warning is no longer present.

                Ready for pull request.

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                nfreese Nowlan Freese added a comment - Tested locally. IGB is working and the warning is no longer present. Ready for pull request.
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                karthik Karthik Raveendran added a comment -

                PR Submitted: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/972

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                karthik Karthik Raveendran added a comment - PR Submitted: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/972
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                ann.loraine Ann Loraine added a comment -

                Merged. New installers built and ready for testing. See: https://bitbucket.org/lorainelab/integrated-genome-browser/downloads/

                Show
                ann.loraine Ann Loraine added a comment - Merged. New installers built and ready for testing. See: https://bitbucket.org/lorainelab/integrated-genome-browser/downloads/

                  People

                  • Assignee:
                    karthik Karthik Raveendran
                    Reporter:
                    ann.loraine Ann Loraine
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                    Dates

                    • Created:
                      Updated:
                      Resolved: