Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:0.25
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Epic Link:
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Sprint:Fall 8, Spring 1, Spring 2, Spring 5
Description
When building main-JDK21 using Docker container, observed these two related warnings:
[WARNING] The POM for com.jidesoft:jide-ultimate-jakarta:jar:3.5.15 is missing, no dependency information available
and
[WARNING] Could not validate integrity of download from https://maven.bioviz.org/repo2/com/jidesoft/jide-ultimate-jakarta/3.5.15/jide-ultimate-jakarta-3.5.15.jar org.eclipse.aether.transfer.ChecksumFailureException: Checksum validation failed, no checksums available at org.eclipse.aether.internal.impl.AbstractChecksumPolicy.onNoMoreChecksums (AbstractChecksumPolicy.java:63) at org.eclipse.aether.connector.basic.ChecksumValidator.validate (ChecksumValidator.java:112) at org.eclipse.aether.connector.basic.BasicRepositoryConnector$GetTaskRunner.runTask (BasicRepositoryConnector.java:484) at org.eclipse.aether.connector.basic.BasicRepositoryConnector$TaskRunner.run (BasicRepositoryConnector.java:414) at org.eclipse.aether.util.concurrency.RunnableErrorForwarder.lambda$wrap$0 (RunnableErrorForwarder.java:66) at java.util.concurrent.ThreadPoolExecutor.runWorker (ThreadPoolExecutor.java:1144) at java.util.concurrent.ThreadPoolExecutor$Worker.run (ThreadPoolExecutor.java:642) at java.lang.Thread.run (Thread.java:1583) [WARNING] Checksum validation failed, no checksums available from repo2 for https://maven.bioviz.org/repo2/com/jidesoft/jide-ultimate-jakarta/3.5.15/jide-ultimate-jakarta-3.5.15.jar
For this task, investigate and fix the source of the above issue.
IGB and Docker image version info:
Docker file used to build the container was: https://bitbucket.org/lorainelab/integrated-genome-browser-docker/raw/d26649c086c8c2cc252e8a18b6e2ca3a74413f0b/Dockerfile
The version of IGB built was: a0860834e (HEAD -> main-JDK21, origin/main-JDK21) removing mac specific code for the right aligned tabs to ensure vertical override is applied
Attachments
Issue Links
- relates to
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IGBF-3525 Investigate build problem: SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder"
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- Closed
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- Closed
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- Closed
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- Closed
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- Closed
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- Closed
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Show 1 more links (1 relates to)
Activity
Pull request: https://bitbucket.org/lorainelab/maven/pull-requests/1
PR is merged and deployed to the maven.bioviz.org host.
To test:
- Check the deployment of the above files. They should now appear in one of the three repos hosted on maven.bioviz.org
- Remove local .m2 to ensure all the things will get downloaded freshly from the maven repositories hosted on maven.bioviz.org
- Compile IGB and check to see if the errors mentioned in the ticket re-occur
The pom error is gone but the checksum error still persists:
[WARNING] Could not validate integrity of download from https://maven.bioviz.org/repo2/com/jidesoft/jide-ultimate-jakarta/3.5.15/jide-ultimate-jakarta-3.5.15.pom org.eclipse.aether.transfer.ChecksumFailureException: Checksum validation failed, no checksums available at org.eclipse.aether.internal.impl.AbstractChecksumPolicy.onNoMoreChecksums (AbstractChecksumPolicy.java:63) at org.eclipse.aether.connector.basic.ChecksumValidator.validate (ChecksumValidator.java:112) at org.eclipse.aether.connector.basic.BasicRepositoryConnector$GetTaskRunner.runTask (BasicRepositoryConnector.java:484) at org.eclipse.aether.connector.basic.BasicRepositoryConnector$TaskRunner.run (BasicRepositoryConnector.java:414) at org.eclipse.aether.connector.basic.BasicRepositoryConnector.get (BasicRepositoryConnector.java:260) at org.eclipse.aether.internal.impl.DefaultArtifactResolver.performDownloads (DefaultArtifactResolver.java:536) at org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolve (DefaultArtifactResolver.java:448) at org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolveArtifacts (DefaultArtifactResolver.java:260) at org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolveArtifact (DefaultArtifactResolver.java:242) at org.apache.maven.repository.internal.DefaultArtifactDescriptorReader.loadPom (DefaultArtifactDescriptorReader.java:231) at org.apache.maven.repository.internal.DefaultArtifactDescriptorReader.readArtifactDescriptor (DefaultArtifactDescriptorReader.java:172) at org.eclipse.aether.internal.impl.collect.df.DfDependencyCollector.resolveCachedArtifactDescriptor (DfDependencyCollector.java:382) at org.eclipse.aether.internal.impl.collect.df.DfDependencyCollector.getArtifactDescriptorResult (DfDependencyCollector.java:368) at org.eclipse.aether.internal.impl.collect.df.DfDependencyCollector.processDependency (DfDependencyCollector.java:218) at org.eclipse.aether.internal.impl.collect.df.DfDependencyCollector.processDependency (DfDependencyCollector.java:156) at org.eclipse.aether.internal.impl.collect.df.DfDependencyCollector.process (DfDependencyCollector.java:138) at org.eclipse.aether.internal.impl.collect.df.DfDependencyCollector.doCollectDependencies (DfDependencyCollector.java:108) at org.eclipse.aether.internal.impl.collect.DependencyCollectorDelegate.collectDependencies (DependencyCollectorDelegate.java:222) at org.eclipse.aether.internal.impl.collect.DefaultDependencyCollector.collectDependencies (DefaultDependencyCollector.java:87) at org.eclipse.aether.internal.impl.DefaultRepositorySystem.collectDependencies (DefaultRepositorySystem.java:305) at org.apache.maven.project.DefaultProjectDependenciesResolver.resolve (DefaultProjectDependenciesResolver.java:151) at org.apache.maven.lifecycle.internal.LifecycleDependencyResolver.getDependencies (LifecycleDependencyResolver.java:224) at org.apache.maven.lifecycle.internal.LifecycleDependencyResolver.resolveProjectDependencies (LifecycleDependencyResolver.java:136) at org.apache.maven.lifecycle.internal.MojoExecutor.ensureDependenciesAreResolved (MojoExecutor.java:369) at org.apache.maven.lifecycle.internal.MojoExecutor.doExecute (MojoExecutor.java:327) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:213) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:175) at org.apache.maven.lifecycle.internal.MojoExecutor.access$000 (MojoExecutor.java:76) at org.apache.maven.lifecycle.internal.MojoExecutor$1.run (MojoExecutor.java:163) at org.apache.maven.plugin.DefaultMojosExecutionStrategy.execute (DefaultMojosExecutionStrategy.java:39) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:160) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:105) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:73) at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:53) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:118) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:261) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:173) at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:101) at org.apache.maven.cli.MavenCli.execute (MavenCli.java:910) at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:283) at org.apache.maven.cli.MavenCli.main (MavenCli.java:206) at jdk.internal.reflect.DirectMethodHandleAccessor.invoke (DirectMethodHandleAccessor.java:103) at java.lang.reflect.Method.invoke (Method.java:580) at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:283) at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:226) at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:407) at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:348) [WARNING] Checksum validation failed, no checksums available from repo2 for https://maven.bioviz.org/repo2/com/jidesoft/jide-ultimate-jakarta/3.5.15/jide-ultimate-jakarta-3.5.15.pom
Made files:
- jide-ultimate-jakarta-3.5.15.pom.md5
- jide-ultimate-jakarta-3.5.15.pom.sha1
Using utilities "md5" and "shasum".
Added to the repository bitbucket.org/lorainelab/maven.
Deployed to bioviz.org.
Testing:
In my local .m2, deleted "jidesoft" from ~/.m2/repository/com.
Built IGB locally in the usual way with:
local aloraine$ mvn clean install 2>build.err 1>build.out
Observed that jidesoft artifacts were downloaded. No errors observed.
Moving to DONE.
Checksum and md5 files for jide-ultimate-jakarta-3.5.15.jar has been created and attached to this ticket. The POM issue is potentially due to the fact the modified pom file for jide-ultimate, which is added to repo2, has an extra extension, ".lastUpdated", as in,"jide-ultimate-jakarta-3.5.15.pom.lastUpdated". This could be causing the issue.