[IGBF-3523] Investigate build problem: POM and checksum for com.jidesoft:jide-ultimate-jakarta:jar:3.5.15 is missing, no dependency information available - JIRA UNCC

Details

Type: Task
Status: Closed (View Workflow)
Priority: Major
Resolution: Done
Affects Version/s: None
Fix Version/s: None
Labels:
None

Story Points:
0.25
Epic Link:
Run IGB in Java 21
Sprint:
Fall 8, Spring 1, Spring 2, Spring 5

Description

When building main-JDK21 using Docker container, observed these two related warnings:

[WARNING] The POM for com.jidesoft:jide-ultimate-jakarta:jar:3.5.15 is missing, no dependency information available

and

[WARNING] Could not validate integrity of download from https://maven.bioviz.org/repo2/com/jidesoft/jide-ultimate-jakarta/3.5.15/jide-ultimate-jakarta-3.5.15.jar
org.eclipse.aether.transfer.ChecksumFailureException: Checksum validation failed, no checksums available
    at org.eclipse.aether.internal.impl.AbstractChecksumPolicy.onNoMoreChecksums (AbstractChecksumPolicy.java:63)
    at org.eclipse.aether.connector.basic.ChecksumValidator.validate (ChecksumValidator.java:112)
    at org.eclipse.aether.connector.basic.BasicRepositoryConnector$GetTaskRunner.runTask (BasicRepositoryConnector.java:484)
    at org.eclipse.aether.connector.basic.BasicRepositoryConnector$TaskRunner.run (BasicRepositoryConnector.java:414)
    at org.eclipse.aether.util.concurrency.RunnableErrorForwarder.lambda$wrap$0 (RunnableErrorForwarder.java:66)
    at java.util.concurrent.ThreadPoolExecutor.runWorker (ThreadPoolExecutor.java:1144)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run (ThreadPoolExecutor.java:642)
    at java.lang.Thread.run (Thread.java:1583)
    [WARNING] Checksum validation failed, no checksums available from repo2 for https://maven.bioviz.org/repo2/com/jidesoft/jide-ultimate-jakarta/3.5.15/jide-ultimate-jakarta-3.5.15.jar

For this task, investigate and fix the source of the above issue.

IGB and Docker image version info:

Docker file used to build the container was: https://bitbucket.org/lorainelab/integrated-genome-browser-docker/raw/d26649c086c8c2cc252e8a18b6e2ca3a74413f0b/Dockerfile
The version of IGB built was: a0860834e (HEAD -> main-JDK21, origin/main-JDK21) removing mac specific code for the right aligned tabs to ensure vertical override is applied

Attachments

Options
- Sort By Name
- Sort By Date
- Ascending
- Descending
- Thumbnails
- List
- Download All

Attachments

jide-ultimate-jakarta-3.5.15.jar.md5
0.0 kB
24/Jan/24 10:41 AM
jide-ultimate-jakarta-3.5.15.jar.sha1
0.0 kB
18/Jan/24 3:17 PM
jide-ultimate-jakarta-3.5.15.pom
0.5 kB
22/Jan/24 2:27 PM

Issue Links

relates to

IGBF-3525 Investigate build problem: SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder"

Closed

IGBF-3516 Investigate build problem: repo1/javax/jlfgr/jlfgr/1.0/jlfgr-1.0.jar main-JDK21 warning

Closed

IGBF-3524 Investigate build problem: Bundle org.lorainelab.igb:flatlaf:bundle:10.0.0 : Classes found in the wrong directory

Closed

IGBF-3521 Investigate build problem: effective model for org.lorainelab.igb:affymetrix-common:bundle:10.0.0

Closed

IGBF-3522 Investigate build problem: unknown parameter ignoreChecksumFailure

Closed

IGBF-3508 Create Install4J v10 Docker image for JDK21

Closed

Show 1 more links (1 relates to)

Activity

Ascending order - Click to sort in descending order

Hide

Permalink

Karthik Raveendran added a comment - 18/Jan/24 3:20 PM

Checksum and md5 files for jide-ultimate-jakarta-3.5.15.jar has been created and attached to this ticket. The POM issue is potentially due to the fact the modified pom file for jide-ultimate, which is added to repo2, has an extra extension, ".lastUpdated", as in,"jide-ultimate-jakarta-3.5.15.pom.lastUpdated". This could be causing the issue.

Show

Karthik Raveendran added a comment - 18/Jan/24 3:20 PM Checksum and md5 files for jide-ultimate-jakarta-3.5.15.jar has been created and attached to this ticket. The POM issue is potentially due to the fact the modified pom file for jide-ultimate, which is added to repo2, has an extra extension, ".lastUpdated", as in,"jide-ultimate-jakarta-3.5.15.pom .lastUpdated ". This could be causing the issue.

5 older comments

Hide

Permalink

Nowlan Freese added a comment - 05/Mar/24 2:30 PM

Pull request: https://bitbucket.org/lorainelab/maven/pull-requests/1

Show

Nowlan Freese added a comment - 05/Mar/24 2:30 PM Pull request: https://bitbucket.org/lorainelab/maven/pull-requests/1

Hide

Permalink

Ann Loraine added a comment - 06/Mar/24 12:43 PM - edited

PR is merged and deployed to the maven.bioviz.org host.

To test:

Check the deployment of the above files. They should now appear in one of the three repos hosted on maven.bioviz.org
Remove local .m2 to ensure all the things will get downloaded freshly from the maven repositories hosted on maven.bioviz.org
Compile IGB and check to see if the errors mentioned in the ticket re-occur

Show

Ann Loraine added a comment - 06/Mar/24 12:43 PM - edited PR is merged and deployed to the maven.bioviz.org host. To test: Check the deployment of the above files. They should now appear in one of the three repos hosted on maven.bioviz.org Remove local .m2 to ensure all the things will get downloaded freshly from the maven repositories hosted on maven.bioviz.org Compile IGB and check to see if the errors mentioned in the ticket re-occur

Hide

Permalink

Karthik Raveendran added a comment - 07/Mar/24 2:51 PM

The pom error is gone but the checksum error still persists:

[WARNING] Could not validate integrity of download from https://maven.bioviz.org/repo2/com/jidesoft/jide-ultimate-jakarta/3.5.15/jide-ultimate-jakarta-3.5.15.pom
org.eclipse.aether.transfer.ChecksumFailureException: Checksum validation failed, no checksums available
    at org.eclipse.aether.internal.impl.AbstractChecksumPolicy.onNoMoreChecksums (AbstractChecksumPolicy.java:63)
    at org.eclipse.aether.connector.basic.ChecksumValidator.validate (ChecksumValidator.java:112)
    at org.eclipse.aether.connector.basic.BasicRepositoryConnector$GetTaskRunner.runTask (BasicRepositoryConnector.java:484)
    at org.eclipse.aether.connector.basic.BasicRepositoryConnector$TaskRunner.run (BasicRepositoryConnector.java:414)
    at org.eclipse.aether.connector.basic.BasicRepositoryConnector.get (BasicRepositoryConnector.java:260)
    at org.eclipse.aether.internal.impl.DefaultArtifactResolver.performDownloads (DefaultArtifactResolver.java:536)
    at org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolve (DefaultArtifactResolver.java:448)
    at org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolveArtifacts (DefaultArtifactResolver.java:260)
    at org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolveArtifact (DefaultArtifactResolver.java:242)
    at org.apache.maven.repository.internal.DefaultArtifactDescriptorReader.loadPom (DefaultArtifactDescriptorReader.java:231)
    at org.apache.maven.repository.internal.DefaultArtifactDescriptorReader.readArtifactDescriptor (DefaultArtifactDescriptorReader.java:172)
    at org.eclipse.aether.internal.impl.collect.df.DfDependencyCollector.resolveCachedArtifactDescriptor (DfDependencyCollector.java:382)
    at org.eclipse.aether.internal.impl.collect.df.DfDependencyCollector.getArtifactDescriptorResult (DfDependencyCollector.java:368)
    at org.eclipse.aether.internal.impl.collect.df.DfDependencyCollector.processDependency (DfDependencyCollector.java:218)
    at org.eclipse.aether.internal.impl.collect.df.DfDependencyCollector.processDependency (DfDependencyCollector.java:156)
    at org.eclipse.aether.internal.impl.collect.df.DfDependencyCollector.process (DfDependencyCollector.java:138)
    at org.eclipse.aether.internal.impl.collect.df.DfDependencyCollector.doCollectDependencies (DfDependencyCollector.java:108)
    at org.eclipse.aether.internal.impl.collect.DependencyCollectorDelegate.collectDependencies (DependencyCollectorDelegate.java:222)
    at org.eclipse.aether.internal.impl.collect.DefaultDependencyCollector.collectDependencies (DefaultDependencyCollector.java:87)
    at org.eclipse.aether.internal.impl.DefaultRepositorySystem.collectDependencies (DefaultRepositorySystem.java:305)
    at org.apache.maven.project.DefaultProjectDependenciesResolver.resolve (DefaultProjectDependenciesResolver.java:151)
    at org.apache.maven.lifecycle.internal.LifecycleDependencyResolver.getDependencies (LifecycleDependencyResolver.java:224)
    at org.apache.maven.lifecycle.internal.LifecycleDependencyResolver.resolveProjectDependencies (LifecycleDependencyResolver.java:136)
    at org.apache.maven.lifecycle.internal.MojoExecutor.ensureDependenciesAreResolved (MojoExecutor.java:369)
    at org.apache.maven.lifecycle.internal.MojoExecutor.doExecute (MojoExecutor.java:327)
    at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:213)
    at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:175)
    at org.apache.maven.lifecycle.internal.MojoExecutor.access$000 (MojoExecutor.java:76)
    at org.apache.maven.lifecycle.internal.MojoExecutor$1.run (MojoExecutor.java:163)
    at org.apache.maven.plugin.DefaultMojosExecutionStrategy.execute (DefaultMojosExecutionStrategy.java:39)
    at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:160)
    at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:105)
    at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:73)
    at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:53)
    at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:118)
    at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:261)
    at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:173)
    at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:101)
    at org.apache.maven.cli.MavenCli.execute (MavenCli.java:910)
    at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:283)
    at org.apache.maven.cli.MavenCli.main (MavenCli.java:206)
    at jdk.internal.reflect.DirectMethodHandleAccessor.invoke (DirectMethodHandleAccessor.java:103)
    at java.lang.reflect.Method.invoke (Method.java:580)
    at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:283)
    at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:226)
    at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:407)
    at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:348)
[WARNING] Checksum validation failed, no checksums available from repo2 for https://maven.bioviz.org/repo2/com/jidesoft/jide-ultimate-jakarta/3.5.15/jide-ultimate-jakarta-3.5.15.pom

Show

Karthik Raveendran added a comment - 07/Mar/24 2:51 PM The pom error is gone but the checksum error still persists: [WARNING] Could not validate integrity of download from https: //maven.bioviz.org/repo2/com/jidesoft/jide-ultimate-jakarta/3.5.15/jide-ultimate-jakarta-3.5.15.pom org.eclipse.aether.transfer.ChecksumFailureException: Checksum validation failed, no checksums available at org.eclipse.aether.internal.impl.AbstractChecksumPolicy.onNoMoreChecksums (AbstractChecksumPolicy.java:63) at org.eclipse.aether.connector.basic.ChecksumValidator.validate (ChecksumValidator.java:112) at org.eclipse.aether.connector.basic.BasicRepositoryConnector$GetTaskRunner.runTask (BasicRepositoryConnector.java:484) at org.eclipse.aether.connector.basic.BasicRepositoryConnector$TaskRunner.run (BasicRepositoryConnector.java:414) at org.eclipse.aether.connector.basic.BasicRepositoryConnector.get (BasicRepositoryConnector.java:260) at org.eclipse.aether.internal.impl.DefaultArtifactResolver.performDownloads (DefaultArtifactResolver.java:536) at org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolve (DefaultArtifactResolver.java:448) at org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolveArtifacts (DefaultArtifactResolver.java:260) at org.eclipse.aether.internal.impl.DefaultArtifactResolver.resolveArtifact (DefaultArtifactResolver.java:242) at org.apache.maven.repository.internal.DefaultArtifactDescriptorReader.loadPom (DefaultArtifactDescriptorReader.java:231) at org.apache.maven.repository.internal.DefaultArtifactDescriptorReader.readArtifactDescriptor (DefaultArtifactDescriptorReader.java:172) at org.eclipse.aether.internal.impl.collect.df.DfDependencyCollector.resolveCachedArtifactDescriptor (DfDependencyCollector.java:382) at org.eclipse.aether.internal.impl.collect.df.DfDependencyCollector.getArtifactDescriptorResult (DfDependencyCollector.java:368) at org.eclipse.aether.internal.impl.collect.df.DfDependencyCollector.processDependency (DfDependencyCollector.java:218) at org.eclipse.aether.internal.impl.collect.df.DfDependencyCollector.processDependency (DfDependencyCollector.java:156) at org.eclipse.aether.internal.impl.collect.df.DfDependencyCollector.process (DfDependencyCollector.java:138) at org.eclipse.aether.internal.impl.collect.df.DfDependencyCollector.doCollectDependencies (DfDependencyCollector.java:108) at org.eclipse.aether.internal.impl.collect.DependencyCollectorDelegate.collectDependencies (DependencyCollectorDelegate.java:222) at org.eclipse.aether.internal.impl.collect.DefaultDependencyCollector.collectDependencies (DefaultDependencyCollector.java:87) at org.eclipse.aether.internal.impl.DefaultRepositorySystem.collectDependencies (DefaultRepositorySystem.java:305) at org.apache.maven.project.DefaultProjectDependenciesResolver.resolve (DefaultProjectDependenciesResolver.java:151) at org.apache.maven.lifecycle.internal.LifecycleDependencyResolver.getDependencies (LifecycleDependencyResolver.java:224) at org.apache.maven.lifecycle.internal.LifecycleDependencyResolver.resolveProjectDependencies (LifecycleDependencyResolver.java:136) at org.apache.maven.lifecycle.internal.MojoExecutor.ensureDependenciesAreResolved (MojoExecutor.java:369) at org.apache.maven.lifecycle.internal.MojoExecutor.doExecute (MojoExecutor.java:327) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:213) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:175) at org.apache.maven.lifecycle.internal.MojoExecutor.access$000 (MojoExecutor.java:76) at org.apache.maven.lifecycle.internal.MojoExecutor$1.run (MojoExecutor.java:163) at org.apache.maven.plugin.DefaultMojosExecutionStrategy.execute (DefaultMojosExecutionStrategy.java:39) at org.apache.maven.lifecycle.internal.MojoExecutor.execute (MojoExecutor.java:160) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:105) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject (LifecycleModuleBuilder.java:73) at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build (SingleThreadedBuilder.java:53) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute (LifecycleStarter.java:118) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:261) at org.apache.maven.DefaultMaven.doExecute (DefaultMaven.java:173) at org.apache.maven.DefaultMaven.execute (DefaultMaven.java:101) at org.apache.maven.cli.MavenCli.execute (MavenCli.java:910) at org.apache.maven.cli.MavenCli.doMain (MavenCli.java:283) at org.apache.maven.cli.MavenCli.main (MavenCli.java:206) at jdk.internal.reflect.DirectMethodHandleAccessor.invoke (DirectMethodHandleAccessor.java:103) at java.lang.reflect.Method.invoke (Method.java:580) at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced (Launcher.java:283) at org.codehaus.plexus.classworlds.launcher.Launcher.launch (Launcher.java:226) at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode (Launcher.java:407) at org.codehaus.plexus.classworlds.launcher.Launcher.main (Launcher.java:348) [WARNING] Checksum validation failed, no checksums available from repo2 for https: //maven.bioviz.org/repo2/com/jidesoft/jide-ultimate-jakarta/3.5.15/jide-ultimate-jakarta-3.5.15.pom

Hide

Permalink

Ann Loraine added a comment - 12/Mar/24 4:04 PM

Made files:

jide-ultimate-jakarta-3.5.15.pom.md5
jide-ultimate-jakarta-3.5.15.pom.sha1

Using utilities "md5" and "shasum".

Added to the repository bitbucket.org/lorainelab/maven.
Deployed to bioviz.org.

Show

Ann Loraine added a comment - 12/Mar/24 4:04 PM Made files: jide-ultimate-jakarta-3.5.15.pom.md5 jide-ultimate-jakarta-3.5.15.pom.sha1 Using utilities "md5" and "shasum". Added to the repository bitbucket.org/lorainelab/maven. Deployed to bioviz.org.

Hide

Permalink

Ann Loraine added a comment - 12/Mar/24 4:08 PM - edited

Testing:

In my local .m2, deleted "jidesoft" from ~/.m2/repository/com.

Built IGB locally in the usual way with:

local aloraine$ mvn clean install 2>build.err 1>build.out

Observed that jidesoft artifacts were downloaded. No errors observed.

Moving to DONE.

Show

Ann Loraine added a comment - 12/Mar/24 4:08 PM - edited Testing: In my local .m2, deleted "jidesoft" from ~/.m2/repository/com. Built IGB locally in the usual way with: local aloraine$ mvn clean install 2>build.err 1>build.out Observed that jidesoft artifacts were downloaded. No errors observed. Moving to DONE.

Investigate build problem: POM and checksum for com.jidesoft:jide-ultimate-jakarta:jar:3.5.15 is missing, no dependency information available

Details

Description

Attachments

Attachments

Issue Links

Activity

People

Dates