[IGBF-3523] Investigate build problem: POM and checksum for com.jidesoft:jide-ultimate-jakarta:jar:3.5.15 is missing, no dependency information available - JIRA UNCC

Details

Type: Task
Status: Closed (View Workflow)
Priority: Major
Resolution: Done
Affects Version/s: None
Fix Version/s: None
Labels:
None

Story Points:
0.25
Epic Link:
Run IGB in Java 21
Sprint:
Fall 8, Spring 1, Spring 2, Spring 5

Description

When building main-JDK21 using Docker container, observed these two related warnings:

[WARNING] The POM for com.jidesoft:jide-ultimate-jakarta:jar:3.5.15 is missing, no dependency information available

and

[WARNING] Could not validate integrity of download from https://maven.bioviz.org/repo2/com/jidesoft/jide-ultimate-jakarta/3.5.15/jide-ultimate-jakarta-3.5.15.jar
org.eclipse.aether.transfer.ChecksumFailureException: Checksum validation failed, no checksums available
    at org.eclipse.aether.internal.impl.AbstractChecksumPolicy.onNoMoreChecksums (AbstractChecksumPolicy.java:63)
    at org.eclipse.aether.connector.basic.ChecksumValidator.validate (ChecksumValidator.java:112)
    at org.eclipse.aether.connector.basic.BasicRepositoryConnector$GetTaskRunner.runTask (BasicRepositoryConnector.java:484)
    at org.eclipse.aether.connector.basic.BasicRepositoryConnector$TaskRunner.run (BasicRepositoryConnector.java:414)
    at org.eclipse.aether.util.concurrency.RunnableErrorForwarder.lambda$wrap$0 (RunnableErrorForwarder.java:66)
    at java.util.concurrent.ThreadPoolExecutor.runWorker (ThreadPoolExecutor.java:1144)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run (ThreadPoolExecutor.java:642)
    at java.lang.Thread.run (Thread.java:1583)
    [WARNING] Checksum validation failed, no checksums available from repo2 for https://maven.bioviz.org/repo2/com/jidesoft/jide-ultimate-jakarta/3.5.15/jide-ultimate-jakarta-3.5.15.jar

For this task, investigate and fix the source of the above issue.

IGB and Docker image version info:

Docker file used to build the container was: https://bitbucket.org/lorainelab/integrated-genome-browser-docker/raw/d26649c086c8c2cc252e8a18b6e2ca3a74413f0b/Dockerfile
The version of IGB built was: a0860834e (HEAD -> main-JDK21, origin/main-JDK21) removing mac specific code for the right aligned tabs to ensure vertical override is applied

Attachments

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Attachments

jide-ultimate-jakarta-3.5.15.jar.md5
0.0 kB
24/Jan/24 10:41 AM
jide-ultimate-jakarta-3.5.15.jar.sha1
0.0 kB
18/Jan/24 3:17 PM
jide-ultimate-jakarta-3.5.15.pom
0.5 kB
22/Jan/24 2:27 PM

Issue Links

relates to

IGBF-3525 Investigate build problem: SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder"

Closed

IGBF-3516 Investigate build problem: repo1/javax/jlfgr/jlfgr/1.0/jlfgr-1.0.jar main-JDK21 warning

Closed

IGBF-3524 Investigate build problem: Bundle org.lorainelab.igb:flatlaf:bundle:10.0.0 : Classes found in the wrong directory

Closed

IGBF-3521 Investigate build problem: effective model for org.lorainelab.igb:affymetrix-common:bundle:10.0.0

Closed

IGBF-3522 Investigate build problem: unknown parameter ignoreChecksumFailure

Closed

IGBF-3508 Create Install4J v10 Docker image for JDK21

Closed

Show 1 more links (1 relates to)

Activity

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Ann Loraine created issue - 13/Dec/23 11:21 AM

Ann Loraine made changes - 13/Dec/23 11:21 AM

Field	Original Value	New Value
Epic Link		~~IGBF-3142~~ [ 21688 ]

Ann Loraine made changes - 13/Dec/23 11:21 AM

Link

This issue relates to ~~IGBF-3522~~ [ ~~IGBF-3522~~ ]

Ann Loraine made changes - 13/Dec/23 11:21 AM

Link

This issue relates to ~~IGBF-3521~~ [ ~~IGBF-3521~~ ]

Ann Loraine made changes - 13/Dec/23 11:22 AM

Link

This issue relates to ~~IGBF-3516~~ [ ~~IGBF-3516~~ ]

Ann Loraine made changes - 13/Dec/23 11:23 AM

Summary

Investigate build problem: POM for com.jidesoft:jide-ultimate-jakarta:jar:3.5.15 is missing, no dependency information available

Investigate build problem: POM and checksum for com.jidesoft:jide-ultimate-jakarta:jar:3.5.15 is missing, no dependency information available

Ann Loraine made changes - 13/Dec/23 11:24 AM

Description

When building main-JDK21 using Docker container, observed this warning:

{code}
[WARNING] The POM for com.jidesoft:jide-ultimate-jakarta:jar:3.5.15 is missing, no dependency information available
{code}

For this task, investigate and fix the source of the above issue.

IGB and Docker image version info:

Docker file used to build the container was: https://bitbucket.org/lorainelab/integrated-genome-browser-docker/raw/d26649c086c8c2cc252e8a18b6e2ca3a74413f0b/Dockerfile
The version of IGB built was: a0860834e (HEAD -> main-JDK21, origin/main-JDK21) removing mac specific code for the right aligned tabs to ensure vertical override is applied

When building main-JDK21 using Docker container, observed these two related warnings:

{code}
[WARNING] The POM for com.jidesoft:jide-ultimate-jakarta:jar:3.5.15 is missing, no dependency information available
{code}

and

{code}
[WARNING] Could not validate integrity of download fro\
m https://maven.bioviz.org/repo2/com/jidesoft/jide-ultimate-jakarta/3.5.15/jide-ultimate-jakarta-3.5.15.jar
org.eclipse.aether.transfer.ChecksumFailureException: Checksum validation failed, no checksums available
    at org.eclipse.aether.internal.impl.AbstractChecksumPolicy.onNoMoreChecksums (AbstractChecksumPolicy.java:63)
    at org.eclipse.aether.connector.basic.ChecksumValidator.validate (ChecksumValidator.java:112)
    at org.eclipse.aether.connector.basic.BasicRepositoryConnector$GetTaskRunner.runTask (BasicRepositoryConnector.java:484)
    at org.eclipse.aether.connector.basic.BasicRepositoryConnector$TaskRunner.run (BasicRepositoryConnector.java:414)
    at org.eclipse.aether.util.concurrency.RunnableErrorForwarder.lambda$wrap$0 (RunnableErrorForwarder.java:66)
    at java.util.concurrent.ThreadPoolExecutor.runWorker (ThreadPoolExecutor.java:1144)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run (ThreadPoolExecutor.java:642)
    at java.lang.Thread.run (Thread.java:1583)
    [WARNING] Checksum validation failed, no checksums available from repo2 for https://maven.bioviz.org/repo2/com/jidesoft/jide-ultimate-jakarta/3.5.15/jide-ultimate-jakarta-3.5.15.jar
{code}

For this task, investigate and fix the source of the above issue.

IGB and Docker image version info:

Docker file used to build the container was: https://bitbucket.org/lorainelab/integrated-genome-browser-docker/raw/d26649c086c8c2cc252e8a18b6e2ca3a74413f0b/Dockerfile
The version of IGB built was: a0860834e (HEAD -> main-JDK21, origin/main-JDK21) removing mac specific code for the right aligned tabs to ensure vertical override is applied

Ann Loraine made changes - 13/Dec/23 11:39 AM

Description

When building main-JDK21 using Docker container, observed these two related warnings:

{code}
[WARNING] The POM for com.jidesoft:jide-ultimate-jakarta:jar:3.5.15 is missing, no dependency information available
{code}

and

{code}
[WARNING] Could not validate integrity of download from https://maven.bioviz.org/repo2/com/jidesoft/jide-ultimate-jakarta/3.5.15/jide-ultimate-jakarta-3.5.15.jar
org.eclipse.aether.transfer.ChecksumFailureException: Checksum validation failed, no checksums available
    at org.eclipse.aether.internal.impl.AbstractChecksumPolicy.onNoMoreChecksums (AbstractChecksumPolicy.java:63)
    at org.eclipse.aether.connector.basic.ChecksumValidator.validate (ChecksumValidator.java:112)
    at org.eclipse.aether.connector.basic.BasicRepositoryConnector$GetTaskRunner.runTask (BasicRepositoryConnector.java:484)
    at org.eclipse.aether.connector.basic.BasicRepositoryConnector$TaskRunner.run (BasicRepositoryConnector.java:414)
    at org.eclipse.aether.util.concurrency.RunnableErrorForwarder.lambda$wrap$0 (RunnableErrorForwarder.java:66)
    at java.util.concurrent.ThreadPoolExecutor.runWorker (ThreadPoolExecutor.java:1144)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run (ThreadPoolExecutor.java:642)
    at java.lang.Thread.run (Thread.java:1583)
    [WARNING] Checksum validation failed, no checksums available from repo2 for https://maven.bioviz.org/repo2/com/jidesoft/jide-ultimate-jakarta/3.5.15/jide-ultimate-jakarta-3.5.15.jar
{code}

For this task, investigate and fix the source of the above issue.

IGB and Docker image version info:

Docker file used to build the container was: https://bitbucket.org/lorainelab/integrated-genome-browser-docker/raw/d26649c086c8c2cc252e8a18b6e2ca3a74413f0b/Dockerfile
The version of IGB built was: a0860834e (HEAD -> main-JDK21, origin/main-JDK21) removing mac specific code for the right aligned tabs to ensure vertical override is applied

Ann Loraine made changes - 13/Dec/23 11:43 AM

Link

This issue relates to ~~IGBF-3524~~ [ ~~IGBF-3524~~ ]

Ann Loraine made changes - 13/Dec/23 11:49 AM

Link

This issue relates to ~~IGBF-3525~~ [ ~~IGBF-3525~~ ]

Ann Loraine made changes - 13/Dec/23 11:53 AM

Link

This issue relates to ~~IGBF-3508~~ [ ~~IGBF-3508~~ ]

Ann Loraine made changes - 27/Dec/23 5:36 AM

Sprint

Fall 8 [ 184 ]

Fall 8, Spring 1 [ 184, 185 ]

Ann Loraine made changes - 27/Dec/23 5:36 AM

Rank

Ranked higher

Karthik Raveendran made changes - 18/Jan/24 3:17 PM

Attachment		jide-ultimate-jakarta-3.5.15.jar,md5 [ 18175 ]
Attachment		jide-ultimate-jakarta-3.5.15.jar.sha1 [ 18176 ]

Karthik Raveendran made changes - 18/Jan/24 3:21 PM

Assignee

Karthik Raveendran [ karthik ]

Karthik Raveendran made changes - 18/Jan/24 3:21 PM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Karthik Raveendran made changes - 18/Jan/24 3:21 PM

Status

In Progress [ 3 ]

Needs 1st Level Review [ 10005 ]

Karthik Raveendran made changes - 18/Jan/24 3:21 PM

Assignee

Karthik Raveendran [ karthik ]

Ann Loraine made changes - 20/Jan/24 4:45 PM

Sprint

Fall 8, Spring 1 [ 184, 185 ]

Fall 8, Spring 1, Spring 2 [ 184, 185, 186 ]

Ann Loraine made changes - 20/Jan/24 4:45 PM

Rank

Ranked higher

Nowlan Freese made changes - 22/Jan/24 1:40 PM

Status

Needs 1st Level Review [ 10005 ]

First Level Review in Progress [ 10301 ]

Nowlan Freese made changes - 22/Jan/24 2:27 PM

Attachment

jide-ultimate-jakarta-3.5.15.pom [ 18179 ]

Nowlan Freese made changes - 22/Jan/24 2:27 PM

Status

First Level Review in Progress [ 10301 ]

Ready for Pull Request [ 10304 ]

Nowlan Freese made changes - 24/Jan/24 10:41 AM

Attachment

jide-ultimate-jakarta-3.5.15.jar,md5 [ 18175 ]

Nowlan Freese made changes - 24/Jan/24 10:41 AM

Attachment

jide-ultimate-jakarta-3.5.15.jar.md5 [ 18181 ]

Ann Loraine made changes - 02/Feb/24 6:27 PM

Sprint

Fall 8, Spring 1, Spring 2 [ 184, 185, 186 ]

Fall 8, Spring 1, Spring 2, Spring 3 [ 184, 185, 186, 187 ]

Ann Loraine made changes - 02/Feb/24 6:27 PM

Rank

Ranked higher

Ann Loraine made changes - 05/Feb/24 10:14 AM

Assignee

Ann Loraine [ aloraine ]

Nowlan Freese made changes - 16/Feb/24 10:17 AM

Sprint

Fall 8, Spring 1, Spring 2, Spring 3 [ 184, 185, 186, 187 ]

Fall 8, Spring 1, Spring 2, Spring 5 [ 184, 185, 186, 189 ]

Ann Loraine made changes - 04/Mar/24 4:44 PM

Assignee

Ann Loraine [ aloraine ]

Karthik Raveendran [ karthik ]

Nowlan Freese made changes - 05/Mar/24 2:31 PM

Status

Ready for Pull Request [ 10304 ]

Pull Request Submitted [ 10101 ]

Nowlan Freese made changes - 05/Mar/24 2:31 PM

Assignee

Karthik Raveendran [ karthik ]

Nowlan Freese made changes - 05/Mar/24 2:35 PM

Assignee

Ann Loraine [ aloraine ]

Ann Loraine made changes - 07/Mar/24 10:56 AM

Status

Pull Request Submitted [ 10101 ]

Reviewing Pull Request [ 10303 ]

Ann Loraine made changes - 07/Mar/24 10:56 AM

Status

Reviewing Pull Request [ 10303 ]

Merged Needs Testing [ 10002 ]

Ann Loraine made changes - 07/Mar/24 10:56 AM

Assignee

Ann Loraine [ aloraine ]

Karthik Raveendran made changes - 07/Mar/24 2:52 PM

Status

Merged Needs Testing [ 10002 ]

Post-merge Testing In Progress [ 10003 ]

Karthik Raveendran made changes - 07/Mar/24 2:52 PM

Status

Post-merge Testing In Progress [ 10003 ]

To-Do [ 10305 ]

Karthik Raveendran made changes - 07/Mar/24 2:52 PM

Assignee

Karthik Raveendran [ karthik ]

Ann Loraine made changes - 12/Mar/24 4:02 PM

Assignee

Karthik Raveendran [ karthik ]

Ann Loraine [ aloraine ]

Ann Loraine made changes - 12/Mar/24 4:02 PM

Status

To-Do [ 10305 ]

In Progress [ 3 ]

Ann Loraine made changes - 12/Mar/24 4:10 PM

Status

In Progress [ 3 ]

Needs 1st Level Review [ 10005 ]