Details
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Type: Bug
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Status: Closed (View Workflow)
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Priority: Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Spring 2, Spring 3
Description
Situation: There is a bug that prevents restriction sites from being mapped when the view in IGB is zoomed all of the way out. This may be due to an off by one error.
Task: Fix the bug so that a user can map all restriction enzyme sites for a chromosome.
To reproduce the issue:
- Select the A_thaliana_Jun_2009 genome
- Do not change the view or zoom in
- Select the Restriction Sites tab (on the right side)
- Select BamHI
- Click Map Sites
- Residues should load automatically and then an error window should appear stating "Residues for seq not available, search aborted."
- Navigate to Chr1:1-30,427,671
- Select BamHI
- Click Map Sites
- This should work and the sites should be mapped, no errors should appear.
Attachments
Issue Links
- relates to
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IGBF-3548 Updating Restriction Enzyme's in IGB
- Closed
Activity
Nowlan Freese
created issue -
Nowlan Freese
made changes -
Field | Original Value | New Value |
---|---|---|
Epic Link | IGBF-1765 [ 17855 ] |
Nowlan Freese
made changes -
Nowlan Freese
made changes -
Assignee | Ann Loraine [ aloraine ] | Kaushik Gopu [ kgopu ] |
Nowlan Freese
made changes -
Assignee | Kaushik Gopu [ kgopu ] | Karthik Raveendran [ karthik ] |
Nowlan Freese
made changes -
Assignee | Karthik Raveendran [ karthik ] |
Nowlan Freese
made changes -
Assignee | Kaushik Gopu [ kgopu ] |
Ann Loraine
made changes -
Sprint | Spring 2 [ 186 ] | Spring 2, Spring 3 [ 186, 187 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Nowlan Freese
made changes -
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Nowlan Freese
made changes -
Summary | Fix mapping restriction enzymes | Investigate error with mapping restriction enzymes over whole chromosome |
Nowlan Freese
made changes -
Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Nowlan Freese
made changes -
Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Nowlan Freese
made changes -
Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
Nowlan Freese
made changes -
Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
Nowlan Freese
made changes -
Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
Nowlan Freese
made changes -
Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
Nowlan Freese
made changes -
Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
Nowlan Freese
made changes -
Resolution | Done [ 10000 ] | |
Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
See RestrictionControlView.java