Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Spring 2, Spring 3
Description
Situation: There is a bug that prevents restriction sites from being mapped when the view in IGB is zoomed all of the way out. This may be due to an off by one error.
Task: Fix the bug so that a user can map all restriction enzyme sites for a chromosome.
To reproduce the issue:
- Select the A_thaliana_Jun_2009 genome
- Do not change the view or zoom in
- Select the Restriction Sites tab (on the right side)
- Select BamHI
- Click Map Sites
- Residues should load automatically and then an error window should appear stating "Residues for seq not available, search aborted."
- Navigate to Chr1:1-30,427,671
- Select BamHI
- Click Map Sites
- This should work and the sites should be mapped, no errors should appear.
Attachments
Issue Links
- relates to
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IGBF-3548 Updating Restriction Enzyme's in IGB
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- Closed
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-1765 [ 17855 ] |
| Assignee | Ann Loraine [ aloraine ] | Kaushik Gopu [ kgopu ] |
| Assignee | Kaushik Gopu [ kgopu ] | Karthik Raveendran [ karthik ] |
| Assignee | Karthik Raveendran [ karthik ] |
| Assignee | Kaushik Gopu [ kgopu ] |
| Sprint | Spring 2 [ 186 ] | Spring 2, Spring 3 [ 186, 187 ] |
| Rank | Ranked higher |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Summary | Fix mapping restriction enzymes | Investigate error with mapping restriction enzymes over whole chromosome |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |