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  1. IGB
  2. IGBF-3554

Investigate error with mapping restriction enzymes over whole chromosome

        Details

        • Type: Bug
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Situation: There is a bug that prevents restriction sites from being mapped when the view in IGB is zoomed all of the way out. This may be due to an off by one error.

          Task: Fix the bug so that a user can map all restriction enzyme sites for a chromosome.

          To reproduce the issue:

          1. Select the A_thaliana_Jun_2009 genome
          2. Do not change the view or zoom in
          3. Select the Restriction Sites tab (on the right side)
          4. Select BamHI
          5. Click Map Sites
          6. Residues should load automatically and then an error window should appear stating "Residues for seq not available, search aborted."
          7. Navigate to Chr1:1-30,427,671
          8. Select BamHI
          9. Click Map Sites
          10. This should work and the sites should be mapped, no errors should appear.

            Attachments

              Issue Links

              relates to

              Improvement - An improvement or enhancement to an existing feature or task. IGBF-3548 Updating Restriction Enzyme's in IGB

              • Minor - Minor loss of function, or other problem where easy workaround is present.
              • Closed

                Activity

                  People

                  • Assignee:
                    kgopu Kaushik Gopu
                    Reporter:
                    nfreese Nowlan Freese
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                    Dates

                    • Created:
                      Updated:
                      Resolved: