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  1. IGB
  2. IGBF-3597

Investigate error that occurs when loading URLs via a script on Windows

        Details

          Description

          An error is occurring when loading URLs into IGB via a script on Windows. Based on the IGB Log, it looks as though IGB is reading in the ":" character as a "-" in the URLs from the script.

          This error is occurring in both IGB 9.1.10 and 10.0.0 on Windows. This script does work on Mac, which is why I suspect it's specific to Windows, but I have not tried to reproduce it on Linux.

          See attached for a copy of the script (StressTest.igb) that can be used to reproduce this error, as well as a screenshot of the error that pops up (UnableToFindURL.png) and the IGB Log (Log_UnableToFindURLError).

            Attachments

            1. A_thaliana_Jun_2009_Chr1.bam
              143 kB
            2. A_thaliana_Jun_2009_Chr1.bam.bai
              0.1 kB
            3. commandSocketTest.sh
              0.4 kB
            4. Log_UnableToFindURLError
              17 kB
            5. nowlanTest.igb
              0.1 kB
            6. StressTest_quickload.igb
              4 kB
            7. StressTest.igb
              5 kB
            8. UnableToFindURL.png
              UnableToFindURL.png
              17 kB

              Issue Links

              blocks

              Task - A task that needs to be done. IGBF-3594 Investigate: Is IGB running in JDK21 faster than IGB running in JDK8 ?

              • Major - Major loss of function.
              • Closed
              relates to

              Improvement - An improvement or enhancement to an existing feature or task. IGBF-1286 Support tilde as shorthand for HOME.DIRECTORY in snapshotmainView

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                pkulzer Paige Kulzer (Inactive) created issue -
                pkulzer Paige Kulzer (Inactive) made changes -
                Field Original Value New Value
                Epic Link IGBF-1765 [ 17855 ]
                pkulzer Paige Kulzer (Inactive) made changes -
                Link This issue blocks IGBF-3594 [ IGBF-3594 ]
                nfreese Nowlan Freese made changes -
                Assignee Kaushik Gopu [ kgopu ]
                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-1286 [ IGBF-1286 ]
                nfreese Nowlan Freese made changes -
                Attachment commandSocketTest.sh [ 18212 ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 3 [ 187 ] Spring 3, Spring 4 [ 187, 188 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                kgopu Kaushik Gopu (Inactive) made changes -
                Attachment A_thaliana_Jun_2009_Chr1.bam [ 18219 ]
                Attachment A_thaliana_Jun_2009_Chr1.bam.bai [ 18220 ]
                kgopu Kaushik Gopu (Inactive) made changes -
                Attachment nowlanTest.igb [ 18221 ]
                kgopu Kaushik Gopu (Inactive) made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                nfreese Nowlan Freese made changes -
                Assignee Kaushik Gopu [ kgopu ]
                nfreese Nowlan Freese made changes -
                Attachment StressTest_quickload.igb [ 18236 ]
                pkulzer Paige Kulzer (Inactive) made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                pkulzer Paige Kulzer (Inactive) made changes -
                Assignee Paige Kulzer [ pkulzer ]
                pkulzer Paige Kulzer (Inactive) made changes -
                Attachment StressTest_Expanded.igb [ 18238 ]
                pkulzer Paige Kulzer (Inactive) made changes -
                Attachment StressTest_Expanded.igb [ 18238 ]
                pkulzer Paige Kulzer (Inactive) made changes -
                Comment [ I've created a new script that can be used to test loading both local and remote data, as well some other commands not covered in StressTest.igb such as snapshots. This new script is called StressTest_Expanded.igb and can be found in the attachments section above. This script should be run in addition to StressTest.igb for testing. ]
                nfreese Nowlan Freese made changes -
                Assignee Paige Kulzer [ pkulzer ] Kaushik Gopu [ kgopu ]
                nfreese Nowlan Freese made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                ann.loraine Ann Loraine made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                ann.loraine Ann Loraine made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                ann.loraine Ann Loraine made changes -
                Assignee Kaushik Gopu [ kgopu ] Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ]
                nfreese Nowlan Freese made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ]
                nfreese Nowlan Freese made changes -
                Status Post-merge Testing In Progress [ 10003 ] Merged Needs Testing [ 10002 ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ]
                nfreese Nowlan Freese made changes -
                Assignee Paige Kulzer [ pkulzer ]
                pkulzer Paige Kulzer (Inactive) made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                pkulzer Paige Kulzer (Inactive) made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                nfreese Nowlan Freese made changes -
                Assignee Paige Kulzer [ pkulzer ] Kaushik Gopu [ kgopu ]
                nfreese Nowlan Freese made changes -
                Fix Version/s 10.0.0 Major Release [ 10900 ]

                  People

                  • Assignee:
                    kgopu Kaushik Gopu (Inactive)
                    Reporter:
                    pkulzer Paige Kulzer (Inactive)
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    4 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: