Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Spring 7, Spring 8, Spring 9, Spring 10
Description
Data has been submitted to SRA and now needs to be reviewed. To do this we perform a rerun of the data by pulling it from SRA directly and pushing it through the nextflow pipeline and prepping it for IGB quick load. To confirm that the data on SRA is correct we can make a few comparisons with the original data.
- Compare files sizes of the original data to the new rerun file sizes.
- Open IGB and compare bam and coverage graphs with the original and rerun data.
- Perform these comparisons SL4 and SL5
mark-2022-timeseries cluster Directories:
Original: /projects/tomato_genome/fnb/dataprocessing/mark-2022-timeseries
Re-run: /projects/tomato_genome/fnb/dataprocessing/SRP441343