Details
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Type: Task
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Status: Merged Needs Testing (View Workflow)
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Priority: Major
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Resolution: Unresolved
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:0.5
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Epic Link:
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Sprint:Spring 7, Spring 8, Spring 9, Spring 10
Description
Situation: Now that the UCSC REST data source has been implemented in IGB, we should be able to disable DAS by default. Previously, DAS was required for the External View tab (IGBF-2776) and the View Region in UCSC Browser (IGBF-2777). This was because the code was using the internal data source object to retrieve a listing of UCSC genome names. This dependency was changed to use the UCSC JSON endpoint in IGBF-2863.
Task:
- Search for and replace any DAS requirements in IGB - though there may not be any left.
- Set DAS to disabled by default in igbDefaultPrefs.json
Attachments
Issue Links
- relates to
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IGBF-2863 Use UCSC JSON endpoint to get list of genomes for External View tab
- Closed
Activity
Nowlan Freese
created issue -
Nowlan Freese
made changes -
Field | Original Value | New Value |
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Epic Link | IGBF-3129 [ 21675 ] |
Nowlan Freese
made changes -
Nowlan Freese
made changes -
Sprint | Spring 6 [ 190 ] | Spring 7 [ 191 ] |
Ann Loraine
made changes -
Sprint | Spring 7 [ 191 ] | Spring 7, Spring 8 [ 191, 192 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Ann Loraine
made changes -
Sprint | Spring 7, Spring 8 [ 191, 192 ] | Spring 7, Spring 8, Spring 9 [ 191, 192, 193 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Jaya Sravani Sirigineedi
made changes -
Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Jaya Sravani Sirigineedi
made changes -
Assignee | Jaya Sravani Sirigineedi [ jsirigin ] |
Jaya Sravani Sirigineedi
made changes -
Attachment | Screenshot 2024-05-10 at 3.36.12 PM.png [ 18376 ] |
Jaya Sravani Sirigineedi
made changes -
Attachment | Screenshot 2024-05-10 at 3.27.59 PM.png [ 18377 ] |
Jaya Sravani Sirigineedi
made changes -
Attachment | Screenshot 2024-05-10 at 3.28.58 PM.png [ 18378 ] |
Jaya Sravani Sirigineedi
made changes -
Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Jaya Sravani Sirigineedi
made changes -
Assignee | Jaya Sravani Sirigineedi [ jsirigin ] |
Ann Loraine
made changes -
Sprint | Spring 7, Spring 8, Spring 9 [ 191, 192, 193 ] | Spring 7, Spring 8, Spring 9, Spring 10 [ 191, 192, 193, 194 ] |
Ann Loraine
made changes -
Rank | Ranked higher |
Nowlan Freese
made changes -
Story Points | 1 | 0.5 |
Nowlan Freese
made changes -
Assignee | Jaya Sravani Sirigineedi [ jsirigin ] |
Nowlan Freese
made changes -
Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Nowlan Freese
made changes -
Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
Jaya Sravani Sirigineedi
made changes -
Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
Jaya Sravani Sirigineedi
made changes -
Assignee | Jaya Sravani Sirigineedi [ jsirigin ] |
Ann Loraine
made changes -
Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
Ann Loraine
made changes -
Assignee | Ann Loraine [ aloraine ] |
Ann Loraine
made changes -
Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
Nowlan Freese
made changes -
Assignee | Ann Loraine [ aloraine ] |
Disabled UCSC DAS Data Provider by default and tested a few functionalities to make sure disabling DAS isn't causing any issues. Everything is working as usual. Updated code is at the branch: https://bitbucket.org/jaya-sravani/integrated-genome-browser/branch/IGBF-3655. Below are screenshots of few tested scenarios:
Loading of human genome with updated UCSC REST code and after disabling DAS (took around 3-4 secs to load):
External View loaded correctly without any issue:
Redirect to UCSC genome browser also worked fine:
Please review and let me know if there are any issues.
To Test: