Details
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Type:
Improvement
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: 10.1.0
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Labels:None
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Story Points:5
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Epic Link:
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Sprint:Spring 8, Spring 9
Description
Task: Update the HTSJDK to the most recent version (see https://github.com/samtools/htsjdk/releases). Currently the Loraine Lab has its own version of the HTSJDK. As part of this ticket, investigate whether we can switch to using the official HTSJDK.
Note that HTSJDK versions greater than 4 are officially compatible with JDK 17. IGB uses JDK 21 so we may encounter some issues upgrading.
Attachments
Issue Links
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-1531 [ 17617 ] |
| Sprint | Spring 8 [ 192 ] | Spring 7 [ 191 ] |
| Sprint | Spring 7 [ 191 ] | Spring 8 [ 192 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Sprint | Spring 8 [ 192 ] | Spring 8, Spring 9 [ 192, 193 ] |
| Rank | Ranked higher |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Kaushik Gopu [ kgopu ] | Nowlan Freese [ nfreese ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Assignee | Nowlan Freese [ nfreese ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Assignee | Kaushik Gopu [ kgopu ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Fix Version/s | 10.1.0 [ 11000 ] |