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  1. IGB
  2. IGBF-3683

Update SRA to use the correct sample codes for Muday lab time course data

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          As shown in the linked ticket, we discovered that 16 samples from the Muday lab's flavonoid time course data were assigned incorrect sample codes.

          We decided to update those records in the SRA to use the correct sample codes.

          Robert Reid is working on that.

            Attachments

              Issue Links

              is blocked by

              Task - A task that needs to be done. IGBF-3701 Muday time course: Check first sequences in renamed fastq VS. what is in SRA

              • Minor - Minor loss of function, or other problem where easy workaround is present.
              • Closed
              relates to

              Task - A task that needs to be done. IGBF-3720 Re-run Nextflow Muday time course data again with SL5 and data downloaded from SRA

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3727 Create new input file for checking SRA code

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3596 Compare original Muday flavonoid data to SRA Re-run data

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                ann.loraine Ann Loraine created issue -
                ann.loraine Ann Loraine made changes -
                Field Original Value New Value
                Epic Link IGBF-2993 [ 21429 ]
                ann.loraine Ann Loraine made changes -
                Link This issue relates to IGBF-3596 [ IGBF-3596 ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 7 [ 191 ] Spring 7, Spring 8 [ 191, 192 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                robofjoy Robert Reid made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                Mdavis4290 Molly Davis made changes -
                Assignee Robert Reid [ robertreid ] Molly Davis [ molly ]
                Mdavis4290 Molly Davis made changes -
                Assignee Molly Davis [ molly ] Robert Reid [ robertreid ]
                robofjoy Robert Reid made changes -
                Attachment screenshot-1.png [ 18333 ]
                robofjoy Robert Reid made changes -
                Link This issue is blocked by IGBF-3701 [ IGBF-3701 ]
                robofjoy Robert Reid made changes -
                Assignee Robert Reid [ robertreid ] Molly Davis [ molly ]
                robofjoy Robert Reid made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                Mdavis4290 Molly Davis made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                Mdavis4290 Molly Davis made changes -
                Attachment Screenshot 2024-04-23 at 3.14.42 PM.png [ 18339 ]
                Mdavis4290 Molly Davis made changes -
                Assignee Molly Davis [ molly ] Robert Reid [ robertreid ]
                Mdavis4290 Molly Davis made changes -
                Status First Level Review in Progress [ 10301 ] To-Do [ 10305 ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 7, Spring 8 [ 191, 192 ] Spring 7, Spring 8, Spring 9 [ 191, 192, 193 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                robofjoy Robert Reid made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                robofjoy Robert Reid made changes -
                Attachment PRJNA1017816-changes2Biosample-reAssignSRR.xlsx [ 18359 ]
                robofjoy Robert Reid made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                robofjoy Robert Reid made changes -
                Assignee Robert Reid [ robertreid ] Molly Davis [ molly ]
                Mdavis4290 Molly Davis made changes -
                Assignee Molly Davis [ molly ] Robert Reid [ robertreid ]
                Mdavis4290 Molly Davis made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                Mdavis4290 Molly Davis made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                robofjoy Robert Reid made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                robofjoy Robert Reid made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                robofjoy Robert Reid made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                robofjoy Robert Reid made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                robofjoy Robert Reid made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]
                Mdavis4290 Molly Davis made changes -
                Link This issue relates to IGBF-3720 [ IGBF-3720 ]
                Mdavis4290 Molly Davis made changes -
                Link This issue relates to IGBF-3727 [ IGBF-3727 ]

                  People

                  • Assignee:
                    robofjoy Robert Reid
                    Reporter:
                    ann.loraine Ann Loraine
                  • Votes:
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                    Dates

                    • Created:
                      Updated:
                      Resolved: