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  1. IGB
  2. IGBF-3683

Update SRA to use the correct sample codes for Muday lab time course data

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          As shown in the linked ticket, we discovered that 16 samples from the Muday lab's flavonoid time course data were assigned incorrect sample codes.

          We decided to update those records in the SRA to use the correct sample codes.

          Robert Reid is working on that.

            Attachments

              Issue Links

              is blocked by

              Task - A task that needs to be done. IGBF-3701 Muday time course: Check first sequences in renamed fastq VS. what is in SRA

              • Minor - Minor loss of function, or other problem where easy workaround is present.
              • Closed
              relates to

              Task - A task that needs to be done. IGBF-3720 Re-run Nextflow Muday time course data again with SL5 and data downloaded from SRA

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3727 Create new input file for checking SRA code

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3596 Compare original Muday flavonoid data to SRA Re-run data

              • Major - Major loss of function.
              • Closed

                Activity

                  People

                  • Assignee:
                    robofjoy Robert Reid
                    Reporter:
                    ann.loraine Ann Loraine
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                    Dates

                    • Created:
                      Updated:
                      Resolved: