Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Spring 8, Spring 9, Spring 10
Description
Use the compare SRA script made for marks data to compare the SRA submission to the original data.
Attachments
Issue Links
- relates to
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- Closed
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-2993 [ 21429 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Rank | Ranked higher |
| Sprint | Spring 8 [ 192 ] | Spring 8, Spring 9 [ 192, 193 ] |
| Rank | Ranked higher |
| Assignee | Molly Davis [ molly ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Ann Loraine [ aloraine ] |
Change requests:
- Move excel and html MultiQC report files to a new directory "Documentation"
- Where is the "multiQC report for the newly run "SRR" samples? We need two multi-qc reports: one showing how the pipeline ran on the original sequence files and one showing how the pipeline ran on the newly downloaded samples
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Assignee | Ann Loraine [ aloraine ] | Molly Davis [ molly ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
Branch: https://bitbucket.org/mdavis4290/molly5-flavonoid-rnaseq/branch/IGBF-3693b
Note: Moved the files to a new documentation folder. The SRA mutliQC reports were already created and added to the repo prior to adding the original data one from the cluster.
| Assignee | Molly Davis [ molly ] | Ann Loraine [ aloraine ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Updated Branch with output file line added:
Above PR is merged.
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
Proceeding to test by re-running checking code.
| Sprint | Spring 8, Spring 9 [ 192, 193 ] | Spring 8, Spring 9, Spring 10 [ 192, 193, 194 ] |
| Rank | Ranked higher |
The new SRA meta-data is correct so far as we can tell. Moving to Done.
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
Update: I found the original data on the cluster but only SL4 was run so for the comparison it will be made with the SRA SL4 run for right now. I am currently creating sample sheets for the original data and the rerun SRA data.