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  1. IGB
  2. IGBF-3821

Implement logic to load the available chromosomes for the selected genome from Ensembl API

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        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
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          Description

          Implement logic to load the available chromosomes for the selected genome from Ensembl API.

          To get the chromosome list:
          GET info/assembly/:species
          API to get the list of chromosomes for a selected species: https://rest.ensembl.org/documentation/info/assembly_info
          Example: https://rest.ensembl.org/info/assembly/homo_sapiens?content-type=application/json
          the top_level_region has all the chromosomes, name and length would be enough to get the assembly info.

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              jsirigin Jaya Sravani Sirigineedi (Inactive) added a comment -

              As the Ensembl team is developing GraphQL and the REST API will be deprecated in a few years, we decided not to move forward with integrating the REST API but to integrate GraphQL in the future, and this ticket will be closed.. More details about this are mentioned in https://jira.bioviz.org/browse/IGBF-4058.

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              jsirigin Jaya Sravani Sirigineedi (Inactive) added a comment - As the Ensembl team is developing GraphQL and the REST API will be deprecated in a few years, we decided not to move forward with integrating the REST API but to integrate GraphQL in the future, and this ticket will be closed.. More details about this are mentioned in https://jira.bioviz.org/browse/IGBF-4058 .

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                • Assignee:
                  jsirigin Jaya Sravani Sirigineedi (Inactive)
                  Reporter:
                  jsirigin Jaya Sravani Sirigineedi (Inactive)
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