Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:2
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Epic Link:
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Sprint:Fall 2, Fall 3
Description
Implement logic to load the available chromosomes for the selected genome from Ensembl API.
To get the chromosome list:
GET info/assembly/:species
API to get the list of chromosomes for a selected species: https://rest.ensembl.org/documentation/info/assembly_info
Example: https://rest.ensembl.org/info/assembly/homo_sapiens?content-type=application/json
the top_level_region has all the chromosomes, name and length would be enough to get the assembly info.
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-3555 [ 22774 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Sprint | Summer 5 [ 199 ] |
| Sprint | Summer 6 [ 200 ] |
| Rank | Ranked higher |
| Sprint | Summer 6 [ 200 ] | Summer 7 [ 201 ] |
| Sprint | Summer 7 [ 201 ] | Fall 1 [ 202 ] |
| Sprint | Fall 1 [ 202 ] | Fall 2 [ 203 ] |
| Sprint | Fall 2 [ 203 ] | Fall 2, Fall 3 [ 203, 204 ] |
| Rank | Ranked higher |
| Sprint | Fall 2, Fall 3 [ 203, 204 ] | Fall 2, Fall 3, Fall 4 [ 203, 204, 205 ] |
| Rank | Ranked higher |
| Sprint | Fall 2, Fall 3, Fall 4 [ 203, 204, 205 ] | Fall 2, Fall 3, Fall 5 [ 203, 204, 206 ] |
| Sprint | Fall 2, Fall 3, Fall 5 [ 203, 204, 206 ] | Fall 2, Fall 3, Fall 6 [ 203, 204, 207 ] |
| Sprint | Fall 2, Fall 3, Fall 6 [ 203, 204, 207 ] | Fall 2, Fall 3 [ 203, 204 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
As the Ensembl team is developing GraphQL and the REST API will be deprecated in a few years, we decided not to move forward with integrating the REST API but to integrate GraphQL in the future, and this ticket will be closed.. More details about this are mentioned in https://jira.bioviz.org/browse/IGBF-4058.