Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Story Points:5
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Epic Link:
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Sprint:Winter 1, Spring 1
Description
Create a new plugin IGB App for Ensembl and do basic UI and integrate it into IGB. The UI should have a search box and the user should be able to do a dynamic search. Use this documentation for research: https://wiki.bioviz.org/confluence/display/igbdevelopers/Developing+IGB+Apps
Attachments
Issue Links
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Link | IGBF-3555 [ 22774 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Summary | Create new plugin IGB App for Ensembl | Investigate and create new plugin IGB App for Ensembl |
| Description | Create a new plugin IGB App for Ensembl and do basic UI and integrate it into IGB. The UI should have a search box and the user should be able to do a dynamic search. | Create a new plugin IGB App for Ensembl and do basic UI and integrate it into IGB. The UI should have a search box and the user should be able to do a dynamic search. Use this documentation for research: https://wiki.bioviz.org/confluence/display/igbdevelopers/Developing+IGB+Apps |
| Story Points | 2 | 3 |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Sprint | Fall 7 [ 208 ] | Spring 1 [ 209 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Story Points | 3 | 5 |
As discussed in the review with Nowlan Freese, made small UI changes, created a new repository, and pushed the code. Here is the code: https://bitbucket.org/jaya-sravani/ensembl-search/src/main/. Next step is to replace the mock with Ensembl data by making API calls, only look into homo_sapiens, and implement the code to load it alone as an improved POC. Will be creating new tickets for this accordingly.
What does this POC app do:
When downloaded, it adds a new tab allowing the user to search for any genome and load the data to IGB. If the user enters a genome name that doesn't exist then a message is displayed saying the genome is not found, if they don't enter anything and click on the search then a message is displayed to enter a valid genome name. If they enter a genome that's present then they will be shown a success message with some details along with a load button, when clicked on the load button, the data gets loaded to IGB. As this is a POC app, we are not doing an actual search, instead, the backend matches the string to a hardcoded value and shows a success message only if the input matches that and the data that gets loaded is mock data which is retrieved from the IGB quickload server.
Notes when testing:
Use custom_homo_sapiens when doing the search as it's been used in the backend to load the mock data.
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Jaya Sravani Sirigineedi [ jsirigin ] |
| Assignee | Nowlan Freese [ nfreese ] |
| Sprint | Winter 1 [ 209 ] | Winter 1, Spring 1 [ 209, 210 ] |
| Rank | Ranked higher |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
Testing:
- I was able to clone Sravani's branch, build it locally, and add and install the plugin to IGB 10.1.0.
- Ensembl Search tab appears and I am able to search for the mock data.
Jaya Sravani Sirigineedi - can we close this ticket? I don't think we need to push anything at this time.
| Assignee | Nowlan Freese [ nfreese ] | Jaya Sravani Sirigineedi [ jsirigin ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
Yes Nowlan Freese, this isn't required to be pushed upstream. I will be closing the ticket.
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
New Plugin App is created and when it is installed it adds an Ensembl Search Tab, doing the UI development for it. Currently investigating a way to have some text, only part of a label to be clickable which isn't feasible by default with JLabel, so trying to find a work around using JEditorPane.