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  1. IGB
  2. IGBF-4138

Remove the implemented Ensembl code

        Details

        • Type: Task
        • Status: Merged Needs Testing (View Workflow)
        • Priority: Major
        • Resolution: Unresolved
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
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          Description

          Remove the implemented Ensembl code for REST API integration. After the discussion, as the REST API is gonna be deprecated in a few years, we decided not to integrate Ensembl via REST API, instead we plan to use their new GraphQL interface to query and integrate it in the future.

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              jsirigin Jaya Sravani Sirigineedi added a comment -

              Reverted the commits, removed the ensembl code and resolved the conflicts as well, here is the branch: https://bitbucket.org/jaya-sravani/integrated-genome-browser/branch/IGBF-4138. Code changes look good to me and tested the app as well, IGB is started and genomes are loading, everything seems to work as expected.
              Note when testing: Check whether the new genomes that are added recently are still present as there were some conflicts that I resolved in the species.txt. There shouldn't be any issue.

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              jsirigin Jaya Sravani Sirigineedi added a comment - Reverted the commits, removed the ensembl code and resolved the conflicts as well, here is the branch: https://bitbucket.org/jaya-sravani/integrated-genome-browser/branch/IGBF-4138 . Code changes look good to me and tested the app as well, IGB is started and genomes are loading, everything seems to work as expected. Note when testing: Check whether the new genomes that are added recently are still present as there were some conflicts that I resolved in the species.txt. There shouldn't be any issue.
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              nfreese Nowlan Freese added a comment -

              Tested Sravani's branch on Mac.

              • IGB builds and runs without errors.
              • Recently added species appear correctly in the Species dropdown.
              • Code changes look good.

              Ready for pull request.

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              nfreese Nowlan Freese added a comment - Tested Sravani's branch on Mac. IGB builds and runs without errors. Recently added species appear correctly in the Species dropdown. Code changes look good. Ready for pull request.
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              jsirigin Jaya Sravani Sirigineedi added a comment -

              Raised the PR: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/1064

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              jsirigin Jaya Sravani Sirigineedi added a comment - Raised the PR: https://bitbucket.org/lorainelab/integrated-genome-browser/pull-requests/1064
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              ann.loraine Ann Loraine added a comment -

              PR merged, installers built and deployed to early access on bioviz.org.
              Ready for final testing.

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              ann.loraine Ann Loraine added a comment - PR merged, installers built and deployed to early access on bioviz.org. Ready for final testing.

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                • Assignee:
                  Unassigned
                  Reporter:
                  jsirigin Jaya Sravani Sirigineedi
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                  • Created:
                    Updated: