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  1. IGBfx
  2. IGBFX-4

Implement Peak Navigation

          Details

          • Type: New Feature
          • Status: To-Do (View Workflow)
          • Priority: Major
          • Resolution: Unresolved
          • Affects Version/s: None
          • Fix Version/s: None
          • Labels:
            None

            Description

            A user has contacted us to request a feature for navigating peaks in data, quickly and easily.

            Many labs are working with ChIP-seq and use genome visualization to check peaks. They start by zooming to a gene of interest and look for peaks nearby. The useful feature would be a button to navigate directly to the next or previous peak (without having to zoom-out, look at track, zoom-in).

            This would be a tremendous usability enhancement for users trying to locate peaks.

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                relates to

                New Feature - A new feature of the product, which has yet to be developed. HELP-212 suggestion for IGB: peak navigation

                • Major - Major loss of function.
                • Closed

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                  mason Mason Meyer (Inactive) added a comment -

                  From user: When working with ChIP-seq we visualize the results of the peak calling, which have been generated with MACS2 and exported (and imported in IGB) in bed format, so there is no need to further filter the peaks.

                  Show
                  mason Mason Meyer (Inactive) added a comment - From user: When working with ChIP-seq we visualize the results of the peak calling, which have been generated with MACS2 and exported (and imported in IGB) in bed format, so there is no need to further filter the peaks.
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                  mason Mason Meyer (Inactive) added a comment -

                  I personally imagine that the user will have to specify the minimum size for a peak and then IGB can navigate to each peak that has a value greater than or equal to the minimum value when the Peak Navigator button is clicked. I will be sure to also add additional details from the user to the comments as we communicate about this story.

                  Show
                  mason Mason Meyer (Inactive) added a comment - I personally imagine that the user will have to specify the minimum size for a peak and then IGB can navigate to each peak that has a value greater than or equal to the minimum value when the Peak Navigator button is clicked. I will be sure to also add additional details from the user to the comments as we communicate about this story.

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      mason Mason Meyer (Inactive)
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                      Dates

                      • Created:
                        Updated: