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  1. release-testing
  2. REL-7

Verify common file format support in IGB

    Details

    • Type: Task
    • Status: Testing Complete (View Workflow)
    • Priority: Major
    • Resolution: Unresolved
    • Labels:
      None
    • Story Points:
      0.25
    • Epic Link:
    • Sprint:
      Testing 1 : 24 Oct - 1 Nov

      Description

      Verify that all commonly used file formats are properly supported in IGB by loading all files available on http://igbquickload.org/smokeTestingQuickload/

      Complete the general function checklist here:
      https://wiki.transvar.org/display/ITD/File+Formats

      Please provide clarification on https://jira.transvar.org/browse/REL-7?focusedCommentId=25993&page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel#comment-25993

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          Activity

          Hide
          nfreese Nowlan Freese added a comment - - edited

          Regarding Philips comment on deletions: How deletions are shown changed with soft-clipping (IGBF-1291 and IGBF-1447).

          Need to update the images showing deletions in testing and in the user's guide .

          The bam-pacbio smoke test file would be a good example to use for making new images, as it features soft-clips, deletions, insertions and mismatches.

          Show
          nfreese Nowlan Freese added a comment - - edited Regarding Philips comment on deletions: How deletions are shown changed with soft-clipping ( IGBF-1291 and IGBF-1447 ). Need to update the images showing deletions in testing and in the user's guide . The bam-pacbio smoke test file would be a good example to use for making new images, as it features soft-clips, deletions, insertions and mismatches.
          Hide
          pbadzuh Philip Badzuh added a comment -

          I have updated the user's guide and the release testing documentation with current images of deletions.

          Show
          pbadzuh Philip Badzuh added a comment - I have updated the user's guide and the release testing documentation with current images of deletions.
          Hide
          pbadzuh Philip Badzuh added a comment -

          I have updated the user's guide page linked in the previous comment with a new annotated image and have added the relevant files to the dropbox folder for this page. Ann Loraine, does the page look alright?

          Show
          pbadzuh Philip Badzuh added a comment - I have updated the user's guide page linked in the previous comment with a new annotated image and have added the relevant files to the dropbox folder for this page. Ann Loraine , does the page look alright?
          Hide
          aloraine Ann Loraine added a comment -

          This shows the new feature and also improves on the image that previously occupied this spot.

          Additional request:

          • Please copy-edit the text above the image. Check for typos, grammar problems, etc.
          • Also edit for clarity if you have ideas for improvement. See Microsoft Manual of Style.
          Show
          aloraine Ann Loraine added a comment - This shows the new feature and also improves on the image that previously occupied this spot. Additional request: Please copy-edit the text above the image. Check for typos, grammar problems, etc. Also edit for clarity if you have ideas for improvement. See Microsoft Manual of Style.
          Hide
          pbadzuh Philip Badzuh added a comment -

          I have made some minor changes to the page for better reading and clarification.

          Show
          pbadzuh Philip Badzuh added a comment - I have made some minor changes to the page for better reading and clarification.

            People

            • Assignee:
              pbadzuh Philip Badzuh
              Reporter:
              pbadzuh Philip Badzuh
            • Votes:
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              Watchers:
              3 Start watching this issue

              Dates

              • Created:
                Updated: