My test sequence was chr1: 17841987 - 17842032. In interbase, this is 46 characters long, not 47.
exception in Sequence.getResidues(start, end)
start = 16, end = 47
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at com.affymetrix.igb.view.SequenceViewer.menuSelected(SequenceViewer.java:706)
at javax.swing.JMenu.fireMenuSelected(JMenu.java:1028)
at javax.swing.JMenu$MenuChangeListener.stateChanged(JMenu.java:1107)
at javax.swing.DefaultButtonModel.fireStateChanged(DefaultButtonModel.java:333)
at javax.swing.DefaultButtonModel.setSelected(DefaultButtonModel.java:215)
at javax.swing.JMenu.setSelected(JMenu.java:294)
at javax.swing.JMenu.menuSelectionChanged(JMenu.java:1175)
at javax.swing.MenuSelectionManager.setSelectedPath(MenuSelectionManager.java:100)
at javax.swing.plaf.basic.BasicMenuUI$Handler.mousePressed(BasicMenuUI.java:434)
at javax.swing.plaf.basic.BasicMenuUI$MouseInputHandler.mousePressed(BasicMenuUI.java:326)
at java.awt.Component.processMouseEvent(Component.java:6371)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
at java.awt.Component.processEvent(Component.java:6139)
at java.awt.Container.processEvent(Container.java:2085)
at java.awt.Component.dispatchEventImpl(Component.java:4736)
at java.awt.Container.dispatchEventImpl(Container.java:2143)
at java.awt.Component.dispatchEvent(Component.java:4566)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4621)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4279)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4212)
at java.awt.Container.dispatchEventImpl(Container.java:2129)
at java.awt.Window.dispatchEventImpl(Window.java:2478)
at java.awt.Component.dispatchEvent(Component.java:4566)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:680)
at java.awt.EventQueue.access$000(EventQueue.java:86)
at java.awt.EventQueue$1.run(EventQueue.java:639)
at java.awt.EventQueue$1.run(EventQueue.java:637)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
at java.awt.EventQueue$2.run(EventQueue.java:653)
at java.awt.EventQueue$2.run(EventQueue.java:651)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:650)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
exception in Sequence.getResidues(start, end)
start = 16, end = 47
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at com.affymetrix.igb.view.SequenceViewer.menuSelected(SequenceViewer.java:706)
at javax.swing.JMenu.fireMenuSelected(JMenu.java:1028)
at javax.swing.JMenu$MenuChangeListener.stateChanged(JMenu.java:1107)
at javax.swing.DefaultButtonModel.fireStateChanged(DefaultButtonModel.java:333)
at javax.swing.DefaultButtonModel.setSelected(DefaultButtonModel.java:215)
at javax.swing.JMenu.setSelected(JMenu.java:294)
at javax.swing.JMenu.menuSelectionChanged(JMenu.java:1175)
at javax.swing.MenuSelectionManager.setSelectedPath(MenuSelectionManager.java:100)
at com.apple.laf.AquaMenuUI$AquaMouseInputHandler.mouseEntered(AquaMenuUI.java:134)
at java.awt.Component.processMouseEvent(Component.java:6383)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
at java.awt.Component.processEvent(Component.java:6139)
at java.awt.Container.processEvent(Container.java:2085)
at java.awt.Component.dispatchEventImpl(Component.java:4736)
at java.awt.Container.dispatchEventImpl(Container.java:2143)
at java.awt.Component.dispatchEvent(Component.java:4566)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4621)
at java.awt.LightweightDispatcher.trackMouseEnterExit(Container.java:4410)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4264)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4212)
at java.awt.Container.dispatchEventImpl(Container.java:2129)
at java.awt.Window.dispatchEventImpl(Window.java:2478)
at java.awt.Component.dispatchEvent(Component.java:4566)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:680)
at java.awt.EventQueue.access$000(EventQueue.java:86)
at java.awt.EventQueue$1.run(EventQueue.java:639)
at java.awt.EventQueue$1.run(EventQueue.java:637)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
at java.awt.EventQueue$2.run(EventQueue.java:653)
at java.awt.EventQueue$2.run(EventQueue.java:651)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:650)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
My test sequence was chr1: 17841987 - 17842032. In interbase, this is 46 characters long, not 47.
exception in Sequence.getResidues(start, end)
start = 16, end = 47
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at com.affymetrix.igb.view.SequenceViewer.menuSelected(SequenceViewer.java:706)
at javax.swing.JMenu.fireMenuSelected(JMenu.java:1028)
at javax.swing.JMenu$MenuChangeListener.stateChanged(JMenu.java:1107)
at javax.swing.DefaultButtonModel.fireStateChanged(DefaultButtonModel.java:333)
at javax.swing.DefaultButtonModel.setSelected(DefaultButtonModel.java:215)
at javax.swing.JMenu.setSelected(JMenu.java:294)
at javax.swing.JMenu.menuSelectionChanged(JMenu.java:1175)
at javax.swing.MenuSelectionManager.setSelectedPath(MenuSelectionManager.java:100)
at javax.swing.plaf.basic.BasicMenuUI$Handler.mousePressed(BasicMenuUI.java:434)
at javax.swing.plaf.basic.BasicMenuUI$MouseInputHandler.mousePressed(BasicMenuUI.java:326)
at java.awt.Component.processMouseEvent(Component.java:6371)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
at java.awt.Component.processEvent(Component.java:6139)
at java.awt.Container.processEvent(Container.java:2085)
at java.awt.Component.dispatchEventImpl(Component.java:4736)
at java.awt.Container.dispatchEventImpl(Container.java:2143)
at java.awt.Component.dispatchEvent(Component.java:4566)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4621)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4279)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4212)
at java.awt.Container.dispatchEventImpl(Container.java:2129)
at java.awt.Window.dispatchEventImpl(Window.java:2478)
at java.awt.Component.dispatchEvent(Component.java:4566)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:680)
at java.awt.EventQueue.access$000(EventQueue.java:86)
at java.awt.EventQueue$1.run(EventQueue.java:639)
at java.awt.EventQueue$1.run(EventQueue.java:637)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
at java.awt.EventQueue$2.run(EventQueue.java:653)
at java.awt.EventQueue$2.run(EventQueue.java:651)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:650)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
exception in Sequence.getResidues(start, end)
start = 16, end = 47
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at com.affymetrix.igb.view.SequenceViewer.menuSelected(SequenceViewer.java:706)
at javax.swing.JMenu.fireMenuSelected(JMenu.java:1028)
at javax.swing.JMenu$MenuChangeListener.stateChanged(JMenu.java:1107)
at javax.swing.DefaultButtonModel.fireStateChanged(DefaultButtonModel.java:333)
at javax.swing.DefaultButtonModel.setSelected(DefaultButtonModel.java:215)
at javax.swing.JMenu.setSelected(JMenu.java:294)
at javax.swing.JMenu.menuSelectionChanged(JMenu.java:1175)
at javax.swing.MenuSelectionManager.setSelectedPath(MenuSelectionManager.java:100)
at com.apple.laf.AquaMenuUI$AquaMouseInputHandler.mouseEntered(AquaMenuUI.java:134)
at java.awt.Component.processMouseEvent(Component.java:6383)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
at java.awt.Component.processEvent(Component.java:6139)
at java.awt.Container.processEvent(Container.java:2085)
at java.awt.Component.dispatchEventImpl(Component.java:4736)
at java.awt.Container.dispatchEventImpl(Container.java:2143)
at java.awt.Component.dispatchEvent(Component.java:4566)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4621)
at java.awt.LightweightDispatcher.trackMouseEnterExit(Container.java:4410)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4264)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4212)
at java.awt.Container.dispatchEventImpl(Container.java:2129)
at java.awt.Window.dispatchEventImpl(Window.java:2478)
at java.awt.Component.dispatchEvent(Component.java:4566)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:680)
at java.awt.EventQueue.access$000(EventQueue.java:86)
at java.awt.EventQueue$1.run(EventQueue.java:639)
at java.awt.EventQueue$1.run(EventQueue.java:637)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
at java.awt.EventQueue$2.run(EventQueue.java:653)
at java.awt.EventQueue$2.run(EventQueue.java:651)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:650)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)