Uploaded image for project: 'IGB 7.0'
  1. IGB 7.0
  2. IGBC-194

change view mode for bai or tbi semantic zoom does not work

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Minor
          • Resolution: Fixed
          • Labels:
            None

            Description

            change view mode for bai or tbi semantic zoom does not work

              Attachments

                Issue Links

                relates to

                Story - Created by JIRA Software - do not edit or delete. Issue type for a user story. IGBF-1920 Visualizing the index

                • Major - Major loss of function.
                • Closed

                  Activity

                  Descending order - Click to sort in ascending order
                  Hide
                  Permalink
                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  And it seems to be working fine

                  Windows v12309

                  Show
                  kkubiak Katharine Kubiak (Inactive) added a comment - And it seems to be working fine Windows v12309
                  Hide
                  Permalink
                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  Okay that makes sense, cool. Should we change the name from tbi_semantic_zoom to TBI Semantic Zoom?

                  Show
                  kkubiak Katharine Kubiak (Inactive) added a comment - Okay that makes sense, cool. Should we change the name from tbi_semantic_zoom to TBI Semantic Zoom?
                  Hide
                  Permalink
                  lfrohman Lance Frohman (Inactive) added a comment -

                  yes, tbi_semantic_zoom will display an estimated depth graph calculated from
                  the .tbi index, even when no data is loaded. For very large files, this is useful,
                  because it is very fast to calculate, the user can see depth for the chr right away,
                  without having to load, wait, and maybe get an out of memory exception.
                  The regular Semantic Zoom uses the real depth graph calculated from the annotations,
                  so the data must be already loaded for this.

                  Show
                  lfrohman Lance Frohman (Inactive) added a comment - yes, tbi_semantic_zoom will display an estimated depth graph calculated from the .tbi index, even when no data is loaded. For very large files, this is useful, because it is very fast to calculate, the user can see depth for the chr right away, without having to load, wait, and maybe get an out of memory exception. The regular Semantic Zoom uses the real depth graph calculated from the annotations, so the data must be already loaded for this.
                  Hide
                  Permalink
                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  Windows v12307

                  For tbi files is there supposed to be a "Semantic Zoom" and a "tbi_semantic_zoom" in the View Mode drop down box?

                  Show
                  kkubiak Katharine Kubiak (Inactive) added a comment - Windows v12307 For tbi files is there supposed to be a "Semantic Zoom" and a "tbi_semantic_zoom" in the View Mode drop down box?
                  Hide
                  Permalink
                  lfrohman Lance Frohman (Inactive) added a comment -

                  fixed
                  rev 12303

                  Show
                  lfrohman Lance Frohman (Inactive) added a comment - fixed rev 12303
                  Hide
                  Permalink
                  hiralv Hiral Vora (Inactive) added a comment -

                  All bugs related to gray are fixed.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - All bugs related to gray are fixed.

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      lfrohman Lance Frohman (Inactive)
                    • Votes:
                      0 Vote for this issue
                      Watchers:
                      0 Start watching this issue

                      Dates

                      • Created:
                        Updated:
                        Resolved: