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  1. IGB
  2. IGBF-1128

Save As... feature appends extra text that can cause the file name to be invalid

        Details

        • Story Points:
          2
        • Sprint:
          Fall 2017

          Description

          While testing IGBF-1092 I noticed that the Save As... feature is not useable at all on Windows. This is because the filename gets appended with additional text causing the file name to be invalid. This is also happening on Mac, but on Mac the filename is not invalid, but the extra text still gets appended.

          For example, if you try to save a graph file as a bedgraph named "test.bedgraph", IGB will actually save the file as "test.bedgraph.*.bedgraph".

          To reproduce:

          1) Select Arabidopsis thaliana genome - go to start screen and click the Arabidopsis image

          2) Choose Data Access > RNA-Seq > Loraine Lab > Mixed Cold > SM > Graph

          3) Select a graph, zoom in on a region

          4) Click Load Data to load some data

          5) Right-click or CNTRL-click track label and select Save As...

          6) Save a file with the name "test.bedgraph"

          Observe: On Mac = the file actually gets saved as test.bedgraph..bedgraph
          On Windows = the file will not be saved at all and there is an exception in the console.

            Attachments

              Issue Links

              relates to

              Bug - A problem which impairs or prevents the functions of the product. IGBF-1410 Improve file name and file existence checking logic when saving track data

              • Major - Major loss of function.
              • Closed

              Bug - A problem which impairs or prevents the functions of the product. IGBF-1149 default file extension for graph tracks

              • Minor - Minor loss of function, or other problem where easy workaround is present.
              • Closed

              Bug - A problem which impairs or prevents the functions of the product. IGBF-1162 Duplicate File Extensions shown in the Windows File Chooser "Save as type" drop-down menu

              • Minor - Minor loss of function, or other problem where easy workaround is present.
              • Closed

              Bug - A problem which impairs or prevents the functions of the product. IGBF-1092 Save As... (bedgraph) feature uses spaces instead of tabs

              • Major - Major loss of function.
              • Closed

              Bug - A problem which impairs or prevents the functions of the product. IGBF-2654 Fix: 'replace' action while saving file

              • Major - Major loss of function.
              • Closed

              Improvement - An improvement or enhancement to an existing feature or task. IGBF-1090 Implement saving of all chromosomes when exporting as bedgraph

              • Major - Major loss of function.
              • Closed

                Activity

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                mason Mason Meyer (Inactive) created issue -
                mason Mason Meyer (Inactive) made changes -
                Field Original Value New Value
                Link This issue relates to IGBF-1092 [ IGBF-1092 ]
                mason Mason Meyer (Inactive) made changes -
                Rank Ranked higher
                sneha Sneha Ramesh Watharkar (Inactive) made changes -
                Assignee Jennifer Daly [ jdaly ]
                sneha Sneha Ramesh Watharkar (Inactive) made changes -
                Status Open [ 1 ] In Progress [ 3 ]
                sneha Sneha Ramesh Watharkar (Inactive) made changes -
                Sprint Sprint 39 [ 47 ]
                sneha Sneha Ramesh Watharkar (Inactive) made changes -
                Rank Ranked lower
                sneha Sneha Ramesh Watharkar (Inactive) made changes -
                Status In Progress [ 3 ] Needs Testing [ 10002 ]
                sneha Sneha Ramesh Watharkar (Inactive) made changes -
                Status Needs Testing [ 10002 ] In Progress [ 3 ]
                ann.loraine Ann Loraine made changes -
                Status In Progress [ 3 ] Pull Request Submitted [ 10101 ]
                ann.loraine Ann Loraine made changes -
                Story Points 2
                ann.loraine Ann Loraine made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                sneha Sneha Ramesh Watharkar (Inactive) made changes -
                Status Reviewing Pull Request [ 10303 ] Needs Testing [ 10002 ]
                sneha Sneha Ramesh Watharkar (Inactive) made changes -
                Assignee Jennifer Daly [ jdaly ]
                mason Mason Meyer (Inactive) made changes -
                Status Needs Testing [ 10002 ] Testing In Progress [ 10003 ]
                mason Mason Meyer (Inactive) made changes -
                Assignee Jennifer Daly [ jdaly ]
                mason Mason Meyer (Inactive) made changes -
                Attachment FileTypeListedTwice.png [ 13965 ]
                mason Mason Meyer (Inactive) made changes -
                Status Testing In Progress [ 10003 ] Needs Testing [ 10002 ]
                mason Mason Meyer (Inactive) made changes -
                Status Needs Testing [ 10002 ] Open [ 1 ]
                mason Mason Meyer (Inactive) made changes -
                Rank Ranked higher
                ieclabau Ivory Blakley (Inactive) made changes -
                Link This issue relates to IGBF-1090 [ IGBF-1090 ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Link This issue relates to IGBF-1149 [ IGBF-1149 ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Attachment SaveTrackAs..PullDownOnMac.png [ 13976 ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Attachment SaveTrackAs..PullDownOnLinux.jpg [ 13977 ]
                sneha Sneha Ramesh Watharkar (Inactive) made changes -
                Attachment windows8_FileTypeNotListedTwiceDropdown.png [ 13978 ]
                sneha Sneha Ramesh Watharkar (Inactive) made changes -
                Status Open [ 1 ] Needs 1st Level Review [ 10005 ]
                sneha Sneha Ramesh Watharkar (Inactive) made changes -
                Assignee Jennifer Daly [ jdaly ] Ann Loraine [ aloraine ]
                sneha Sneha Ramesh Watharkar (Inactive) made changes -
                Assignee Ann Loraine [ aloraine ]
                djoshi4 Deepti Joshi (Inactive) made changes -
                Status Needs 1st Level Review [ 10005 ] Reviewing [ 10301 ]
                djoshi4 Deepti Joshi (Inactive) made changes -
                Assignee Deepti Joshi [ djoshi4 ]
                djoshi4 Deepti Joshi (Inactive) made changes -
                Attachment Windows_10_fileTypeNotListedTwice.png [ 13984 ]
                djoshi4 Deepti Joshi (Inactive) made changes -
                Status Reviewing [ 10301 ] Ready for Pull Request [ 10304 ]
                djoshi4 Deepti Joshi (Inactive) made changes -
                Assignee Deepti Joshi [ djoshi4 ] Jennifer Daly [ jdaly ]
                djoshi4 Deepti Joshi (Inactive) made changes -
                Status Ready for Pull Request [ 10304 ] Needs 1st Level Review [ 10005 ]
                djoshi4 Deepti Joshi (Inactive) made changes -
                Assignee Jennifer Daly [ jdaly ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Assignee Ivory Clabaugh [ ieclabau ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Status Needs 1st Level Review [ 10005 ] Reviewing [ 10301 ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Assignee Ivory Clabaugh [ ieclabau ] Ann Loraine [ aloraine ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Status Reviewing [ 10301 ] Needs 1st Level Review [ 10005 ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Assignee Ann Loraine [ aloraine ] Mason Meyer [ mason ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Status Needs 1st Level Review [ 10005 ] Needs Testing [ 10002 ]
                mason Mason Meyer (Inactive) made changes -
                Status Needs Testing [ 10002 ] Testing In Progress [ 10003 ]
                mason Mason Meyer (Inactive) made changes -
                Link This issue relates to IGBF-1162 [ IGBF-1162 ]
                mason Mason Meyer (Inactive) made changes -
                Resolution Done [ 10000 ]
                Status Testing In Progress [ 10003 ] Closed [ 6 ]
                mason Mason Meyer (Inactive) made changes -
                Fix Version/s 9.0.1 Minor Release [ 10500 ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Link This issue relates to IGBF-1410 [ IGBF-1410 ]
                ann.loraine Ann Loraine made changes -
                Workflow Loraine Lab Workflow [ 17728 ] Fall 2019 Workflow Update [ 19783 ]
                ann.loraine Ann Loraine made changes -
                Workflow Fall 2019 Workflow Update [ 19783 ] Revised Fall 2019 Workflow Update [ 21902 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-2654 [ IGBF-2654 ]

                  People

                  • Assignee:
                    mason Mason Meyer (Inactive)
                    Reporter:
                    mason Mason Meyer (Inactive)
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                    Dates

                    • Created:
                      Updated:
                      Resolved: