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  1. IGB
  2. IGBF-3001

Handle data sources with improper SSL certificates

    Details

    • Story Points:
      1
    • Sprint:
      Fall 6 2021 Oct 25 - Nov 5, Fall 7 2021 Nov 8 - Nov 24, Fall 8 2021 Nov 29 - Dec 10, Fall 9 2021 Dec 13 - Dec 24

      Description

      See the discussion here for details on the problem and a potential solution.

        Attachments

        1. Data.png
          Data.png
          133 kB
        2. datasource.png
          datasource.png
          70 kB
        3. error - secies.png
          error - secies.png
          571 kB
        4. error - URL.png
          error - URL.png
          697 kB

          Issue Links

            Activity

            Hide
            omarne Omkar Marne (Inactive) added a comment - - edited

            I ran trackhub-facade site locally. After trying above URL I got an error. Please see attached screenshot. My guess is URL is incorrect.

            Dr [~aloraine] Please provide the correct the URL if its incorrect.

            Show
            omarne Omkar Marne (Inactive) added a comment - - edited I ran trackhub-facade site locally. After trying above URL I got an error. Please see attached screenshot. My guess is URL is incorrect. Dr [~aloraine] Please provide the correct the URL if its incorrect.
            Hide
            ann.loraine Ann Loraine added a comment -

            You need to get the URL from Philip Badzuh. (The above URL is from Philip during scrum)

            Show
            ann.loraine Ann Loraine added a comment - You need to get the URL from Philip Badzuh . (The above URL is from Philip during scrum)
            Hide
            pbadzuh Philip Badzuh (Inactive) added a comment -

            The error that relates to this ticket is specific to the IGB application, so you should:

            • Make sure you can add the provided URL as a data source in IGB
            • Open a an organism/genome combination supported by the trackhub that defines the URL. In this case, you can try homo sapiens, genome hg38 (the first genome in the IGB dropdown)
            • Select and load a file in the available data panel folder associated with the URL.
            • Observe that no error popup is shown in IGB.

            The warning you observed in your browser results from an issue with the content-type in the response of the endpoint not matching the actual content, but the data is still transmitted - you can use developer tools to confirm or try the same request using postman. This should be fixed in a new ticket as it's misleading, however, it shouldn't block you from testing this ticket.

            Show
            pbadzuh Philip Badzuh (Inactive) added a comment - The error that relates to this ticket is specific to the IGB application, so you should: Make sure you can add the provided URL as a data source in IGB Open a an organism/genome combination supported by the trackhub that defines the URL. In this case, you can try homo sapiens, genome hg38 (the first genome in the IGB dropdown) Select and load a file in the available data panel folder associated with the URL. Observe that no error popup is shown in IGB. The warning you observed in your browser results from an issue with the content-type in the response of the endpoint not matching the actual content, but the data is still transmitted - you can use developer tools to confirm or try the same request using postman. This should be fixed in a new ticket as it's misleading, however, it shouldn't block you from testing this ticket.
            Hide
            omarne Omkar Marne (Inactive) added a comment - - edited

            When I added the above URL as a data source in IGB, I got an error saying 'Following servers are not responding - Trackhub' ( Name of the data source). I was not able to select the species and genome version.

            Please check the attached snapshots.

            Dr. [~aloraine] Philip Badzuh Please check.

            Show
            omarne Omkar Marne (Inactive) added a comment - - edited When I added the above URL as a data source in IGB, I got an error saying 'Following servers are not responding - Trackhub' ( Name of the data source). I was not able to select the species and genome version. Please check the attached snapshots. Dr. [~aloraine] Philip Badzuh Please check.
            Hide
            omarne Omkar Marne (Inactive) added a comment - - edited

            After installing the latest IGB release and enabling the IGB quick load data source, the data from the localhost data source is visible. Please see attached snapshots.

            Closing the ticket.

            Show
            omarne Omkar Marne (Inactive) added a comment - - edited After installing the latest IGB release and enabling the IGB quick load data source, the data from the localhost data source is visible. Please see attached snapshots. Closing the ticket.

              People

              • Assignee:
                pbadzuh Philip Badzuh (Inactive)
                Reporter:
                pbadzuh Philip Badzuh (Inactive)
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                Watchers:
                3 Start watching this issue

                Dates

                • Created:
                  Updated:
                  Resolved: