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  1. IGB
  2. IGBF-3087

Fix custom SSL certificate validation

        Details

        • Story Points:
          1
        • Epic Link:
        • Sprint:
          Spring 5 2022 Feb 28 - Mar 11, Spring 6 2022 Mar 14 - Mar 25, Spring 7 2022 Mar 28 - Apr 8

          Description

          Fix the custom SSL validation method introduced in IGBF-3001, to address the issue described in the comment here.

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              relates to

              Task - A task that needs to be done. IGBF-3079 CLONE - Attempt to convert and load each track hub featured in the table interface

              • Major - Major loss of function.
              • Closed

              Improvement - An improvement or enhancement to an existing feature or task. IGBF-3001 Handle data sources with improper SSL certificates

              • Major - Major loss of function.
              • Closed

                Activity

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                pbadzuh Philip Badzuh (Inactive) added a comment -

                As described in the comment linked to in the description, it may be possible to entirely avoid this issue if we can determine a way to force IGB to use v3 of X.509. After doing some digging, I was not able to determine what exactly causes IGB to require v2, so to extend the previous fix to this problem, please see my changes here.

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                pbadzuh Philip Badzuh (Inactive) added a comment - As described in the comment linked to in the description, it may be possible to entirely avoid this issue if we can determine a way to force IGB to use v3 of X.509. After doing some digging, I was not able to determine what exactly causes IGB to require v2, so to extend the previous fix to this problem, please see my changes here .
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                ann.loraine Ann Loraine added a comment -

                Please submit PR.

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                ann.loraine Ann Loraine added a comment - Please submit PR.
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                pbadzuh Philip Badzuh (Inactive) added a comment -

                Please see PR here.

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                pbadzuh Philip Badzuh (Inactive) added a comment - Please see PR here .
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                ann.loraine Ann Loraine added a comment -

                Merged. Installers build and deployed to IGB "early access" section of bioviz.org Web site.

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                ann.loraine Ann Loraine added a comment - Merged. Installers build and deployed to IGB "early access" section of bioviz.org Web site.
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                omarne Omkar Marne (Inactive) added a comment - - edited

                Followed testing instructions from IGBF-3001 :

                I ran the trackhub facade locally and added given URL as an IGB datasource. The given is URL : http://localhost:8000/api/?hubUrl=https://dashr2.lisanwanglab.org/tracks/DASHR2_hub.txt&filePath=/ is unreachable in IGB.

                Philip Badzuh Please check.

                Show
                omarne Omkar Marne (Inactive) added a comment - - edited Followed testing instructions from IGBF-3001 : I ran the trackhub facade locally and added given URL as an IGB datasource. The given is URL : http://localhost:8000/api/?hubUrl=https://dashr2.lisanwanglab.org/tracks/DASHR2_hub.txt&filePath=/ is unreachable in IGB. Philip Badzuh Please check.
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                pbadzuh Philip Badzuh (Inactive) added a comment -

                Omkar Marne, I am not able to replicate your observation. Are you sure that you are running the correct version of the codebase? Make sure that:

                • You are on the IGBF-3087 branch of the IGB repo
                • Your master branch for the trackhubs repo is up-to-date
                • You have run the below for the IGB project: 
                  mvn clean install
                Show
                pbadzuh Philip Badzuh (Inactive) added a comment - Omkar Marne , I am not able to replicate your observation. Are you sure that you are running the correct version of the codebase? Make sure that: You are on the IGBF-3087 branch of the IGB repo Your master branch for the trackhubs repo is up-to-date You have run the below for the IGB project: mvn clean install
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                omarne Omkar Marne (Inactive) added a comment -

                Followed above testing instructions.

                The SSL certificate validation issue has been fixed.

                Closing the ticket.

                Show
                omarne Omkar Marne (Inactive) added a comment - Followed above testing instructions. The SSL certificate validation issue has been fixed. Closing the ticket.

                  People

                  • Assignee:
                    pbadzuh Philip Badzuh (Inactive)
                    Reporter:
                    pbadzuh Philip Badzuh (Inactive)
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                    Dates

                    • Created:
                      Updated:
                      Resolved: