Details
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Type:
Epic
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Status: To-Do (View Workflow)
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Priority:
Major
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Resolution: Unresolved
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Affects Version/s: None
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Fix Version/s: None
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Labels:None
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Epic Name:Publish rice splicing and methylation results
Description
The study investigated how two different rice varieties responded to salt treatment, including:
- Agami, salt-tolerant
- M103, salt-sensitive
A PDF version of the research proposal description is attached.
Summarizing the study design:
Roots and shoots treated with a methylation inhibitor and/or salt and then RNA-Seq and bisulfite sequencing was done.
Resources:
- The SRA project identifier PRJNA481973 (see link) describes the data sets.
- To view the data, add this address as a new Quickload data source: http://lorainelab-quickload.scidas.org/saltyrice/
- Code repository: https://bitbucket.org/lorainelab/bseq_rice/src/master/
- Somewhat salty tweet thread in which scientists debate whether methylation matters
Attachments
Activity
| Field | Original Value | New Value |
|---|---|---|
| Epic Name | Publish rice AS and methylation results | Publish rice splicing and methylation results |
| Epic Child | IGBF-3038 [ 21552 ] |
| Description |
The study investigated how two different rice varieties responded to salt treatment, including:
* Nippon-bare, salt-sensitive * A103, salt-tolerant |
| Attachment | ResearchAndTrainingPlan_NSFProposal_final.pdf [ 17042 ] |
| Description |
The study investigated how two different rice varieties responded to salt treatment, including:
* Nippon-bare, salt-sensitive * A103, salt-tolerant |
The study investigated how two different rice varieties responded to salt treatment, including:
* Nippon-bare, salt-sensitive * A103, salt-tolerant A PDF version of the research proposal description is attached. Summarizing the study design: Roots and shoots treated with a methylation inhibitor and/or salt and then RNA-Seq and bisulfite sequencing was done. The SRA project identifier [PRJNA481973 (see link)|https://www.ncbi.nlm.nih.gov/bioproject/PRJNA481973/] describes the data sets. |
| Description |
The study investigated how two different rice varieties responded to salt treatment, including:
* Nippon-bare, salt-sensitive * A103, salt-tolerant A PDF version of the research proposal description is attached. Summarizing the study design: Roots and shoots treated with a methylation inhibitor and/or salt and then RNA-Seq and bisulfite sequencing was done. The SRA project identifier [PRJNA481973 (see link)|https://www.ncbi.nlm.nih.gov/bioproject/PRJNA481973/] describes the data sets. |
The study investigated how two different rice varieties responded to salt treatment, including:
* Agami, salt-sensitive * A103, salt-tolerant A PDF version of the research proposal description is attached. Summarizing the study design: Roots and shoots treated with a methylation inhibitor and/or salt and then RNA-Seq and bisulfite sequencing was done. The SRA project identifier [PRJNA481973 (see link)|https://www.ncbi.nlm.nih.gov/bioproject/PRJNA481973/] describes the data sets. |
| Rank | Ranked higher |
| Rank | Ranked higher |
| Description |
The study investigated how two different rice varieties responded to salt treatment, including:
* Agami, salt-sensitive * A103, salt-tolerant A PDF version of the research proposal description is attached. Summarizing the study design: Roots and shoots treated with a methylation inhibitor and/or salt and then RNA-Seq and bisulfite sequencing was done. The SRA project identifier [PRJNA481973 (see link)|https://www.ncbi.nlm.nih.gov/bioproject/PRJNA481973/] describes the data sets. |
The study investigated how two different rice varieties responded to salt treatment, including:
* Agami, salt-sensitive * A103, salt-tolerant A PDF version of the research proposal description is attached. Summarizing the study design: Roots and shoots treated with a methylation inhibitor and/or salt and then RNA-Seq and bisulfite sequencing was done. The SRA project identifier [PRJNA481973 (see link)|https://www.ncbi.nlm.nih.gov/bioproject/PRJNA481973/] describes the data sets. To view the data, add this address as a new Quickload data source: [http://lorainelab-quickload.scidas.org/saltyrice/|http://lorainelab-quickload.scidas.org/saltyrice/] |
| Epic Child |
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| Epic Child |
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| Epic Child |
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| Description |
The study investigated how two different rice varieties responded to salt treatment, including:
* Agami, salt-sensitive * A103, salt-tolerant A PDF version of the research proposal description is attached. Summarizing the study design: Roots and shoots treated with a methylation inhibitor and/or salt and then RNA-Seq and bisulfite sequencing was done. The SRA project identifier [PRJNA481973 (see link)|https://www.ncbi.nlm.nih.gov/bioproject/PRJNA481973/] describes the data sets. To view the data, add this address as a new Quickload data source: [http://lorainelab-quickload.scidas.org/saltyrice/|http://lorainelab-quickload.scidas.org/saltyrice/] |
The study investigated how two different rice varieties responded to salt treatment, including:
* Agami, salt-sensitive * A103, salt-tolerant A PDF version of the research proposal description is attached. Summarizing the study design: Roots and shoots treated with a methylation inhibitor and/or salt and then RNA-Seq and bisulfite sequencing was done. The SRA project identifier [PRJNA481973 (see link)|https://www.ncbi.nlm.nih.gov/bioproject/PRJNA481973/] describes the data sets. To view the data, add this address as a new Quickload data source: [http://lorainelab-quickload.scidas.org/saltyrice/|http://lorainelab-quickload.scidas.org/saltyrice/] Code repository: https://bitbucket.org/lorainelab/bseq_rice/src/master/ |
| Description |
The study investigated how two different rice varieties responded to salt treatment, including:
* Agami, salt-sensitive * A103, salt-tolerant A PDF version of the research proposal description is attached. Summarizing the study design: Roots and shoots treated with a methylation inhibitor and/or salt and then RNA-Seq and bisulfite sequencing was done. The SRA project identifier [PRJNA481973 (see link)|https://www.ncbi.nlm.nih.gov/bioproject/PRJNA481973/] describes the data sets. To view the data, add this address as a new Quickload data source: [http://lorainelab-quickload.scidas.org/saltyrice/|http://lorainelab-quickload.scidas.org/saltyrice/] Code repository: https://bitbucket.org/lorainelab/bseq_rice/src/master/ |
The study investigated how two different rice varieties responded to salt treatment, including:
* Agami, salt-sensitive * M103, salt-tolerant A PDF version of the research proposal description is attached. Summarizing the study design: Roots and shoots treated with a methylation inhibitor and/or salt and then RNA-Seq and bisulfite sequencing was done. Resources: * The SRA project identifier [PRJNA481973 (see link)|https://www.ncbi.nlm.nih.gov/bioproject/PRJNA481973/] describes the data sets. * To view the data, add this address as a new Quickload data source: [http://lorainelab-quickload.scidas.org/saltyrice/|http://lorainelab-quickload.scidas.org/saltyrice/] * Code repository: https://bitbucket.org/lorainelab/bseq_rice/src/master/ |
| Epic Child |
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| Epic Child |
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| Epic Child |
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| Description |
The study investigated how two different rice varieties responded to salt treatment, including:
* Agami, salt-sensitive * M103, salt-tolerant A PDF version of the research proposal description is attached. Summarizing the study design: Roots and shoots treated with a methylation inhibitor and/or salt and then RNA-Seq and bisulfite sequencing was done. Resources: * The SRA project identifier [PRJNA481973 (see link)|https://www.ncbi.nlm.nih.gov/bioproject/PRJNA481973/] describes the data sets. * To view the data, add this address as a new Quickload data source: [http://lorainelab-quickload.scidas.org/saltyrice/|http://lorainelab-quickload.scidas.org/saltyrice/] * Code repository: https://bitbucket.org/lorainelab/bseq_rice/src/master/ |
The study investigated how two different rice varieties responded to salt treatment, including:
* Agami, salt-tolerant * M103, salt-sensitive A PDF version of the research proposal description is attached. Summarizing the study design: Roots and shoots treated with a methylation inhibitor and/or salt and then RNA-Seq and bisulfite sequencing was done. Resources: * The SRA project identifier [PRJNA481973 (see link)|https://www.ncbi.nlm.nih.gov/bioproject/PRJNA481973/] describes the data sets. * To view the data, add this address as a new Quickload data source: [http://lorainelab-quickload.scidas.org/saltyrice/|http://lorainelab-quickload.scidas.org/saltyrice/] * Code repository: https://bitbucket.org/lorainelab/bseq_rice/src/master/ |
| Epic Child |
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| Description |
The study investigated how two different rice varieties responded to salt treatment, including:
* Agami, salt-tolerant * M103, salt-sensitive A PDF version of the research proposal description is attached. Summarizing the study design: Roots and shoots treated with a methylation inhibitor and/or salt and then RNA-Seq and bisulfite sequencing was done. Resources: * The SRA project identifier [PRJNA481973 (see link)|https://www.ncbi.nlm.nih.gov/bioproject/PRJNA481973/] describes the data sets. * To view the data, add this address as a new Quickload data source: [http://lorainelab-quickload.scidas.org/saltyrice/|http://lorainelab-quickload.scidas.org/saltyrice/] * Code repository: https://bitbucket.org/lorainelab/bseq_rice/src/master/ |
The study investigated how two different rice varieties responded to salt treatment, including:
* Agami, salt-tolerant * M103, salt-sensitive A PDF version of the research proposal description is attached. Summarizing the study design: Roots and shoots treated with a methylation inhibitor and/or salt and then RNA-Seq and bisulfite sequencing was done. Resources: * The SRA project identifier [PRJNA481973 (see link)|https://www.ncbi.nlm.nih.gov/bioproject/PRJNA481973/] describes the data sets. * To view the data, add this address as a new Quickload data source: [http://lorainelab-quickload.scidas.org/saltyrice/|http://lorainelab-quickload.scidas.org/saltyrice/] * Code repository: https://bitbucket.org/lorainelab/bseq_rice/src/master/ * Fun tweet thread where scientists debate whether methylation matters - https://twitter.com/ProfBootyPhD/status/1484629999919386624?s=20 |
| Description |
The study investigated how two different rice varieties responded to salt treatment, including:
* Agami, salt-tolerant * M103, salt-sensitive A PDF version of the research proposal description is attached. Summarizing the study design: Roots and shoots treated with a methylation inhibitor and/or salt and then RNA-Seq and bisulfite sequencing was done. Resources: * The SRA project identifier [PRJNA481973 (see link)|https://www.ncbi.nlm.nih.gov/bioproject/PRJNA481973/] describes the data sets. * To view the data, add this address as a new Quickload data source: [http://lorainelab-quickload.scidas.org/saltyrice/|http://lorainelab-quickload.scidas.org/saltyrice/] * Code repository: https://bitbucket.org/lorainelab/bseq_rice/src/master/ * Fun tweet thread where scientists debate whether methylation matters - https://twitter.com/ProfBootyPhD/status/1484629999919386624?s=20 |
The study investigated how two different rice varieties responded to salt treatment, including:
* Agami, salt-tolerant * M103, salt-sensitive A PDF version of the research proposal description is attached. Summarizing the study design: Roots and shoots treated with a methylation inhibitor and/or salt and then RNA-Seq and bisulfite sequencing was done. Resources: * The SRA project identifier [PRJNA481973 (see link)|https://www.ncbi.nlm.nih.gov/bioproject/PRJNA481973/] describes the data sets. * To view the data, add this address as a new Quickload data source: [http://lorainelab-quickload.scidas.org/saltyrice/|http://lorainelab-quickload.scidas.org/saltyrice/] * Code repository: https://bitbucket.org/lorainelab/bseq_rice/src/master/ * [Somewhat salty tweet thread|https://twitter.com/ProfBootyPhD/status/1484629999919386624?s=20] in which scientists debate whether methylation matters |
| Epic Child |
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| Epic Child |
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| Epic Child | IGBF-3091 [ 21637 ] |
| Epic Child |
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| Epic Child | IGBF-3093 [ 21639 ] |
| Epic Child | IGBF-3094 [ 21640 ] |
| Epic Child | IGBF-3095 [ 21641 ] |
| Epic Child |
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| Epic Child | IGBF-3097 [ 21643 ] |
| Epic Child | IGBF-3098 [ 21644 ] |
| Epic Child | IGBF-3099 [ 21645 ] |
| Epic Child | IGBF-3100 [ 21646 ] |
| Epic Child | IGBF-3101 [ 21647 ] |
| Epic Child | IGBF-3102 [ 21648 ] |
| Epic Status | To Do [ 10001 ] | Done [ 10003 ] |