Details
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Type:
Task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: 9.1.10 Major Release
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Labels:
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Story Points:4
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Epic Link:
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Sprint:Spring 9 2022 May 9, Summer 3 2022 June 21, Summer 4 2022 July 4, Summer 5 2022 July 18, Summer 6 2022 Aug 1, Fall 1 2022 Aug 15
Description
The newest version of Install4J allows packaging JREs that will work on both types of Apple processor / OS. Since our current release of IGB cannot function on Apple Silicon (M1 chip), as discussed in IGBF-3104, we need to provide a new installer for users with this new type of computer.
For this task:
- Understand the new version 9 Install4J features relevant to our goals
- Recreate the Docker image we use to build IGB installers via Bitbucket pipelines
- Reconfigure our bitbucket pipeline process to use the new Docker image
- Create new installers for each platform, including the new MacOS platform
- Test the new installer on a new M1 Apple computer
References:
- Docker for IGB git repository - https://bitbucket.org/lorainelab/integrated-genome-browser-docker
- Testing the Docker image interactively - https://canvas.instructure.com/courses/1164217/pages/learn-to-use-igb-docker-image-build-environment
- Cleaning up old un-needed images from a host - https://www.baeldung.com/ops/docker-removing-images
Attachments
Issue Links
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IGBF-3104 Investigate IGB crash on MacOS
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IGBF-3140 Fix App Manager problem with Zulu Java8 JDK
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Show 8 more links (8 relates to)
Activity
| Field | Original Value | New Value |
|---|---|---|
| Description |
The newest version of Install4J allows packaging JREs that will work on both types of Apple processor / OS. Since our current release of IGB cannot function on Apple Silicon (M1 chip), we need to provide a new installer for users with this new type of computer.
For this task; * Understand the new version 9 Install4J features relevant to our goals * Recreate the Docker image we use to build IGB installers via Bitbucket pipelines * Reconfigure our bitbucket pipeline process to use the new Docker image * Create new installers for each platform, including the new MacOS platform * Test the new installer on a new M1 Apple computer |
| Labels | Advanced |
| Description |
The newest version of Install4J allows packaging JREs that will work on both types of Apple processor / OS. Since our current release of IGB cannot function on Apple Silicon (M1 chip), we need to provide a new installer for users with this new type of computer.
For this task; * Understand the new version 9 Install4J features relevant to our goals * Recreate the Docker image we use to build IGB installers via Bitbucket pipelines * Reconfigure our bitbucket pipeline process to use the new Docker image * Create new installers for each platform, including the new MacOS platform * Test the new installer on a new M1 Apple computer |
The newest version of Install4J allows packaging JREs that will work on both types of Apple processor / OS. Since our current release of IGB cannot function on Apple Silicon (M1 chip), as discussed in For this task; * Understand the new version 9 Install4J features relevant to our goals * Recreate the Docker image we use to build IGB installers via Bitbucket pipelines * Reconfigure our bitbucket pipeline process to use the new Docker image * Create new installers for each platform, including the new MacOS platform * Test the new installer on a new M1 Apple computer |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Comment | [ ~aloraine ] |
| Story Points | 4 |
| Epic Link | IGBF-1765 [ 17855 ] |
| Sprint | Spring 9 2022 May 9 [ 144 ] | Spring 9 2022 May 9, Summer 1 2022 May 23 [ 144, 147 ] |
| Rank | Ranked higher |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Sprint | Spring 9 2022 May 9, Summer 1 2022 May 23 [ 144, 147 ] | Spring 9 2022 May 9 [ 144 ] |
| Sprint | Spring 9 2022 May 9 [ 144 ] | Spring 9 2022 May 9, Summer 2 2022 June 6 [ 144, 148 ] |
| Rank | Ranked higher |
| Sprint | Spring 9 2022 May 9, Summer 2 2022 June 6 [ 144, 148 ] | Spring 9 2022 May 9 [ 144 ] |
| Sprint | Spring 9 2022 May 9 [ 144 ] | Spring 9 2022 May 9, Summer 3 2022 June 21 [ 144, 149 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Sprint | Spring 9 2022 May 9, Summer 3 2022 June 21 [ 144, 149 ] | Spring 9 2022 May 9, Summer 3 2022 June 21, Summer 4 2022 July 4 [ 144, 149, 150 ] |
| Rank | Ranked higher |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Sprint | Spring 9 2022 May 9, Summer 3 2022 June 21, Summer 4 2022 July 4 [ 144, 149, 150 ] | Spring 9 2022 May 9, Summer 3 2022 June 21, Summer 4 2022 July 4, Summer 5 2022 July 18 [ 144, 149, 150, 151 ] |
| Rank | Ranked higher |
| Sprint | Spring 9 2022 May 9, Summer 3 2022 June 21, Summer 4 2022 July 4, Summer 5 2022 July 18 [ 144, 149, 150, 151 ] | Spring 9 2022 May 9, Summer 3 2022 June 21, Summer 4 2022 July 4 [ 144, 149, 150 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Sprint | Spring 9 2022 May 9, Summer 3 2022 June 21, Summer 4 2022 July 4 [ 144, 149, 150 ] | Spring 9 2022 May 9, Summer 3 2022 June 21, Summer 4 2022 July 4, Summer 5 2022 July 18 [ 144, 149, 150, 151 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Summary | Upgrade Install4J to version 9 | Make new Docker image with version 9 Install4J and Zulu JDKs to build IGB |
| Description |
The newest version of Install4J allows packaging JREs that will work on both types of Apple processor / OS. Since our current release of IGB cannot function on Apple Silicon (M1 chip), as discussed in For this task; * Understand the new version 9 Install4J features relevant to our goals * Recreate the Docker image we use to build IGB installers via Bitbucket pipelines * Reconfigure our bitbucket pipeline process to use the new Docker image * Create new installers for each platform, including the new MacOS platform * Test the new installer on a new M1 Apple computer |
The newest version of Install4J allows packaging JREs that will work on both types of Apple processor / OS. Since our current release of IGB cannot function on Apple Silicon (M1 chip), as discussed in For this task; * Understand the new version 9 Install4J features relevant to our goals * Recreate the Docker image we use to build IGB installers via Bitbucket pipelines * Reconfigure our bitbucket pipeline process to use the new Docker image * Create new installers for each platform, including the new MacOS platform * Test the new installer on a new M1 Apple computer Notes: * Docker for IGB - https://bitbucket.org/lorainelab/integrated-genome-browser-docker |
| Description |
The newest version of Install4J allows packaging JREs that will work on both types of Apple processor / OS. Since our current release of IGB cannot function on Apple Silicon (M1 chip), as discussed in For this task; * Understand the new version 9 Install4J features relevant to our goals * Recreate the Docker image we use to build IGB installers via Bitbucket pipelines * Reconfigure our bitbucket pipeline process to use the new Docker image * Create new installers for each platform, including the new MacOS platform * Test the new installer on a new M1 Apple computer Notes: * Docker for IGB - https://bitbucket.org/lorainelab/integrated-genome-browser-docker |
The newest version of Install4J allows packaging JREs that will work on both types of Apple processor / OS. Since our current release of IGB cannot function on Apple Silicon (M1 chip), as discussed in For this task; * Understand the new version 9 Install4J features relevant to our goals * Recreate the Docker image we use to build IGB installers via Bitbucket pipelines * Reconfigure our bitbucket pipeline process to use the new Docker image * Create new installers for each platform, including the new MacOS platform * Test the new installer on a new M1 Apple computer Notes: * Docker for IGB - https://bitbucket.org/lorainelab/integrated-genome-browser-docker * Testing the Docker image interactively - https://canvas.instructure.com/courses/1164217/pages/learn-to-use-igb-docker-image-build-environment?module_item_id=43241015 |
| Description |
The newest version of Install4J allows packaging JREs that will work on both types of Apple processor / OS. Since our current release of IGB cannot function on Apple Silicon (M1 chip), as discussed in For this task; * Understand the new version 9 Install4J features relevant to our goals * Recreate the Docker image we use to build IGB installers via Bitbucket pipelines * Reconfigure our bitbucket pipeline process to use the new Docker image * Create new installers for each platform, including the new MacOS platform * Test the new installer on a new M1 Apple computer Notes: * Docker for IGB - https://bitbucket.org/lorainelab/integrated-genome-browser-docker * Testing the Docker image interactively - https://canvas.instructure.com/courses/1164217/pages/learn-to-use-igb-docker-image-build-environment?module_item_id=43241015 |
The newest version of Install4J allows packaging JREs that will work on both types of Apple processor / OS. Since our current release of IGB cannot function on Apple Silicon (M1 chip), as discussed in For this task; * Understand the new version 9 Install4J features relevant to our goals * Recreate the Docker image we use to build IGB installers via Bitbucket pipelines * Reconfigure our bitbucket pipeline process to use the new Docker image * Create new installers for each platform, including the new MacOS platform * Test the new installer on a new M1 Apple computer Notes: * Docker for IGB - https://bitbucket.org/lorainelab/integrated-genome-browser-docker * Testing the Docker image interactively - https://canvas.instructure.com/courses/1164217/pages/learn-to-use-igb-docker-image-build-environment |
| Sprint | Spring 9 2022 May 9, Summer 3 2022 June 21, Summer 4 2022 July 4, Summer 5 2022 July 18 [ 144, 149, 150, 151 ] | Spring 9 2022 May 9, Summer 3 2022 June 21, Summer 4 2022 July 4, Summer 5 2022 July 18, Summer 6 2022 Aug 1 [ 144, 149, 150, 151, 152 ] |
| Rank | Ranked higher |
| Description |
The newest version of Install4J allows packaging JREs that will work on both types of Apple processor / OS. Since our current release of IGB cannot function on Apple Silicon (M1 chip), as discussed in For this task; * Understand the new version 9 Install4J features relevant to our goals * Recreate the Docker image we use to build IGB installers via Bitbucket pipelines * Reconfigure our bitbucket pipeline process to use the new Docker image * Create new installers for each platform, including the new MacOS platform * Test the new installer on a new M1 Apple computer Notes: * Docker for IGB - https://bitbucket.org/lorainelab/integrated-genome-browser-docker * Testing the Docker image interactively - https://canvas.instructure.com/courses/1164217/pages/learn-to-use-igb-docker-image-build-environment |
The newest version of Install4J allows packaging JREs that will work on both types of Apple processor / OS. Since our current release of IGB cannot function on Apple Silicon (M1 chip), as discussed in For this task; * Understand the new version 9 Install4J features relevant to our goals * Recreate the Docker image we use to build IGB installers via Bitbucket pipelines * Reconfigure our bitbucket pipeline process to use the new Docker image * Create new installers for each platform, including the new MacOS platform * Test the new installer on a new M1 Apple computer Notes: * Docker for IGB git repository - https://bitbucket.org/lorainelab/integrated-genome-browser-docker * Testing the Docker image interactively - https://canvas.instructure.com/courses/1164217/pages/learn-to-use-igb-docker-image-build-environment * Cleaning up old un-needed images from a host - https://www.baeldung.com/ops/docker-removing-images |
| Description |
The newest version of Install4J allows packaging JREs that will work on both types of Apple processor / OS. Since our current release of IGB cannot function on Apple Silicon (M1 chip), as discussed in For this task; * Understand the new version 9 Install4J features relevant to our goals * Recreate the Docker image we use to build IGB installers via Bitbucket pipelines * Reconfigure our bitbucket pipeline process to use the new Docker image * Create new installers for each platform, including the new MacOS platform * Test the new installer on a new M1 Apple computer Notes: * Docker for IGB git repository - https://bitbucket.org/lorainelab/integrated-genome-browser-docker * Testing the Docker image interactively - https://canvas.instructure.com/courses/1164217/pages/learn-to-use-igb-docker-image-build-environment * Cleaning up old un-needed images from a host - https://www.baeldung.com/ops/docker-removing-images |
The newest version of Install4J allows packaging JREs that will work on both types of Apple processor / OS. Since our current release of IGB cannot function on Apple Silicon (M1 chip), as discussed in For this task: * Understand the new version 9 Install4J features relevant to our goals * Recreate the Docker image we use to build IGB installers via Bitbucket pipelines * Reconfigure our bitbucket pipeline process to use the new Docker image * Create new installers for each platform, including the new MacOS platform * Test the new installer on a new M1 Apple computer *References*: * Docker for IGB git repository - https://bitbucket.org/lorainelab/integrated-genome-browser-docker * Testing the Docker image interactively - https://canvas.instructure.com/courses/1164217/pages/learn-to-use-igb-docker-image-build-environment * Cleaning up old un-needed images from a host - https://www.baeldung.com/ops/docker-removing-images |
| Comment | [ Installers end up in main/target/media. ] |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Ann Loraine [ aloraine ] | Nowlan Freese [ nfreese ] |
| Attachment | very-messed-up-IGB-UI.png [ 17255 ] |
| Attachment | Nowlan_log.txt [ 17256 ] |
| Assignee | Nowlan Freese [ nfreese ] | Ann Loraine [ aloraine ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | To-Do [ 10305 ] |
| Fix Version/s | 9.1.10 Major Release [ 10700 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Assignee | Nowlan Freese [ nfreese ] |
| Assignee | Nowlan Freese [ nfreese ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Assignee | Nowlan Freese [ nfreese ] |
| Attachment | nowlan_pipelineLog.txt [ 17258 ] |
| Attachment | nowlan_pipelineLog2.txt [ 17259 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Assignee | Nowlan Freese [ nfreese ] | Ann Loraine [ aloraine ] |
| Comment | [ What is Rosetta? ] |
| Sprint | Spring 9 2022 May 9, Summer 3 2022 June 21, Summer 4 2022 July 4, Summer 5 2022 July 18, Summer 6 2022 Aug 1 [ 144, 149, 150, 151, 152 ] | Spring 9 2022 May 9, Summer 3 2022 June 21, Summer 4 2022 July 4, Summer 5 2022 July 18, Summer 6 2022 Aug 1, Fall 1 2022 Aug 15 [ 144, 149, 150, 151, 152, 153 ] |
| Rank | Ranked higher |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Assignee | Nowlan Freese [ nfreese ] |
| Assignee | Nowlan Freese [ nfreese ] | Ann Loraine [ aloraine ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Resolution | Done [ 10000 ] | |
| Status | Closed [ 6 ] | To-Do [ 10305 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Link | This issue relates to IGBF-3429 [ IGBF-3429 ] |