Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-3113

Make new Docker image with version 9 Install4J and Zulu JDKs to build IGB

        Details

        • Story Points:
          4
        • Epic Link:
        • Sprint:
          Spring 9 2022 May 9, Summer 3 2022 June 21, Summer 4 2022 July 4, Summer 5 2022 July 18, Summer 6 2022 Aug 1, Fall 1 2022 Aug 15

          Description

          The newest version of Install4J allows packaging JREs that will work on both types of Apple processor / OS. Since our current release of IGB cannot function on Apple Silicon (M1 chip), as discussed in IGBF-3104, we need to provide a new installer for users with this new type of computer.

          For this task:

          • Understand the new version 9 Install4J features relevant to our goals
          • Recreate the Docker image we use to build IGB installers via Bitbucket pipelines
          • Reconfigure our bitbucket pipeline process to use the new Docker image
          • Create new installers for each platform, including the new MacOS platform
          • Test the new installer on a new M1 Apple computer

          References:

            Attachments

              Issue Links

              relates to

              Bug - A problem which impairs or prevents the functions of the product. IGBF-3104 Investigate IGB crash on MacOS

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3159 Investigate: Tabbed panels freeze in IGB 9.1.10 packaged with Zulu JDK u332 on Windows

              • Blocker - Blocks development and/or testing work, production could not run.
              • Closed

              Task - A task that needs to be done. IGBF-2569 Create a new docker image with latest version of install4J

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3115 Test Zulu Linux installer

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3118 Create new JRE bundle for Windows installer

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3124 Create new JRE bundle for Linux installer

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3134 Test Zulu MacOS installer

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3158 Investigate: Why does an M2 download Rosetta when installing IGB

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3298 Create JDK 11 bundle for Windows to build IGB using JDK 11

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3120 Investigate: Uninstaller does not remove bundle cache for a version

              • Major - Major loss of function.
              • To-Do

              Improvement - An improvement or enhancement to an existing feature or task. IGBF-3140 Fix App Manager problem with Zulu Java8 JDK

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3079 CLONE - Attempt to convert and load each track hub featured in the table interface

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3508 Create Install4J v10 Docker image for JDK21

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                75 older comments
                Hide
                Permalink
                nfreese Nowlan Freese added a comment -

                Tested on Mac OS 12.5 with Intel processor.
                Reset preferences to default and deleted the .igb folder.

                Tested the master dmg installer.
                I was able to start IGB, load data, install ProtAnnot, open a genome, select genes, start ProtAnnot, stop ProtAnnot, and uninstall ProtAnnot without any issues or warnings/errors in the logs.

                Closing ticket.

                Note that a new ticket has been created (IGBF-3158) to investigate the installer issue with Mac M1/2 processors.

                Show
                nfreese Nowlan Freese added a comment - Tested on Mac OS 12.5 with Intel processor. Reset preferences to default and deleted the .igb folder. Tested the master dmg installer. I was able to start IGB, load data, install ProtAnnot, open a genome, select genes, start ProtAnnot, stop ProtAnnot, and uninstall ProtAnnot without any issues or warnings/errors in the logs. Closing ticket. Note that a new ticket has been created ( IGBF-3158 ) to investigate the installer issue with Mac M1/2 processors.
                Hide
                Permalink
                ann.loraine Ann Loraine added a comment - - edited

                Thank you for finding the problem. I modified the install4j configuration file to include:

                architecture="universal"

                attribute in tag "macosFolder"

                I pushed the new commit directly to the master branch. New apple installer is built and ready for testing. Download as usual from https://bitbucket.org/lorainelab/integrated-genome-browser/downloads/.
                attn: Nowlan Freese

                UPDATE: The master branch no longer requires Rosetta when running on an M1 Mac.

                Show
                ann.loraine Ann Loraine added a comment - - edited Thank you for finding the problem. I modified the install4j configuration file to include: architecture= "universal" attribute in tag "macosFolder" I pushed the new commit directly to the master branch. New apple installer is built and ready for testing. Download as usual from https://bitbucket.org/lorainelab/integrated-genome-browser/downloads/ . attn: Nowlan Freese UPDATE: The master branch no longer requires Rosetta when running on an M1 Mac.
                Hide
                Permalink
                ann.loraine Ann Loraine added a comment -

                Need to commit new Dockerfile and double-check that documentation is up-to-date with the changes.

                Show
                ann.loraine Ann Loraine added a comment - Need to commit new Dockerfile and double-check that documentation is up-to-date with the changes.
                Hide
                Permalink
                ann.loraine Ann Loraine added a comment - - edited

                New Docker file is merged from aloraine branch IGBF-3113 in repository https://bitbucket.org/lorainelab/integrated-genome-browser-docker.

                Show
                ann.loraine Ann Loraine added a comment - - edited New Docker file is merged from aloraine branch IGBF-3113 in repository https://bitbucket.org/lorainelab/integrated-genome-browser-docker .
                Hide
                Permalink
                ann.loraine Ann Loraine added a comment -

                Updating README for the Dockerfile repository at https://bitbucket.org/lorainelab/integrated-genome-browser-docker.

                Show
                ann.loraine Ann Loraine added a comment - Updating README for the Dockerfile repository at https://bitbucket.org/lorainelab/integrated-genome-browser-docker .

                  People

                  • Assignee:
                    ann.loraine Ann Loraine
                    Reporter:
                    ann.loraine Ann Loraine
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    3 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: