Use the most recent master branch installer which should have the most recent commit: b20f0769dbffd53bedddaac8bbb8ba173c969bdd from 2022-08-29.

Download page: https://bitbucket.org/lorainelab/integrated-genome-browser/downloads/

Make sure to remove the .igb folder and reset preferences to default in IGB prior to testing.

Jira tickets included in the 9.1.10 release: https://wiki.bioviz.org/confluence/display/ITD/9.1.10

I have added a new subsystem to test the Add Data Source endpoint (IGBF-3131): https://wiki.bioviz.org/confluence/display/ITD/Add+Data+Source+endpoint

Note that the example URL also tests if IGB can follow a redirect from http to https (IGBF-3103).

Updated bookmark image on https://wiki.bioviz.org/confluence/display/ITD/Bookmarks to reflect changes from IGBF-3008 and IGBF-3032

Updated add data source image on https://wiki.bioviz.org/confluence/display/ITD/Local+Quickload to reflect changes from IGBF-2957.

UPDATE: I was able to find and reattach all of the missing images.

The navigation page has several broken images: https://wiki.bioviz.org/confluence/display/ITD/Navigation

It looks like the broken images are pointing to wiki.transvar.org/download/attachments:
https://wiki.transvar.org/download/attachments/37945553/Selection_016.png?version=2&modificationDate=1441203752000&api=v2

Other images link to googleusercontent:
https://lh3.googleusercontent.com/lG-z-FE-38V9i1aq1WcXUdbT1PUp8Nv1fSKH56sTLlqXmHvcG9uXmq_8PPZxczhY5SgU4vDFqXV__Ilp5ZyUxKYIVFlL3VDp8WdXMUeMeMQylAALRyXGk_15eAwwBH85smrHpK-j

Or the links are just the file for the image:
[|addDataSource.png]

Attempting to replace the wiki.transvar with wiki.bioviz or wiki.bioviz.org/confluence returns a page not found:
https://wiki.bioviz.org/confluence/download/attachments/37945553/Selection_016.png?version=2&modificationDate=1441203752000&api=v2

Assuming we cannot recover these images I can attempt to create new images based on the descriptions.

Updated the bigBed file (BigBed_HomoSapien.bigbed) in the AWS S3 bucket (https://quickload-testing.s3.amazonaws.com/smokeTestingQuickload/) to reflect the parsing as part of IGBF-2978.

Command used to create the new bigBed file:

bedToBigBed -as=bedDetail.as -type=bed12+2 -tab H_sapiens_Dec_2013_ncbiRefSeqCurated.bed chrom.sizes BigBed_HomoSapien.bb

Updated the bigBed image in https://wiki.bioviz.org/confluence/display/ITD/File+Formats

Working through release testing on Mac M1 system. I have completed through Subsystem "External View" so far.
A few issues I have come across:

Mac M1. Subsystem > Data Provider > Secure Data Sources.
(1) The prompt asking for a password uses the name of the below/previously listed source, not the source it's asking a password for.
(2) Once the genome version is chosen and it starts loading, the user is prompted for the second time to enter the password(s).
(3) This may not be a problem but The "secure2 TDNA" data source does not stay checked and autoloaded while the "secure1" data source does.

Mac M1. Subsystem > FileChooser > General Function Checklist.
(4) For the step: "Verify that a pop-up appears asking you to confirm if you would like to replace the file."
Saving a new file with the same name in the same location replaces the file. No pop-up appears to ask if the new file should replace the existing one.

Mac M1. Subsystem > Quickload Saver.
(5) "Save Custom Genome to Local Quickload Site" appears to work.
But: when adding these as a data source in Preferences, the process appears to go through and a "your data is now available." pop-up appears. The "Adding [dataSourceName]" process is shown in the bottom left not making any progress and no data source ever appears.

JIRA Issues were created for previously mentioned bugs.

I completed testing on Thursday through the Navigation Subsystem. The issue IGBF-3199 regarding local quickloads needs resolved before testing on Subsystems Local Quickload and Quickload Saver can be completed.

All of the Subsystems have been tested except for the sections reliant on IGBF-3199. That's next on my To-do.

After that I will do a more thorough investigation of these questions:

Protannot
"Verify that the information link directs to the appropriate "About InterPro" page"-404 page not found. redirects to correct page http://www.ebi.ac.uk/interpro/about/interpro/ 
Search"Select "DMD" from the Quick-search drop-down to navigate to"navigates to "GSDMD" not DMD.
-I believe this is a previous issue. need to search JIRA.

Soft-Clipping: is good to go.

Synonyms: good.
local quickload section still needs testing.

Tabbed Panels: good.

Toolbar: good.

Track Operators - Annotation Tracks
-links to user guide pages are missing 'confluence' domain word in the URL.
-unsure how to test "Find someplace where the matching Find Junctions operation using value 5 and value 10 have different scores. Identify the read(s) that matches that junction, and where where one side of the read is between 5 and 10 bases".
see screenshot

-need to review user guide pages.

Track Operations -Graph Tracks
-need to review user guide pages
-trouble with Single Track Operations part 3, images don't match. see screenshot.

Track View: good.

I will fill in the appropriate checkboxes on Monday.

*all completed*

Windows and Mac testing for 9.1.10 is complete. Next is Linux.

Linux Subsystems testing is now complete.
Next we will focus on finalizing changes for IGBF-3208 and IGBF-3196 and retest saving files and secure data sources on the three operating systems.

Testing complete. Closing ticket, ready for release.