Details
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Type:
Improvement
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: 9.1.8 Major Release
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Labels:None
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Story Points:3
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Epic Link:
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Sprint:Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28
Description
Situation: When DAS support was restored in IGB additional genomes provided by UCSC were made available. However, many of these genomes appear oddly in the species or genome dropdown menus. This indicates these genomes may not be included in the synonyms.txt file.
Task: Update the synonyms.txt file. Also make sure species listed in the main IGB QL site are represented in species.txt and synonyms.txt in the files that are packaged with IGB.
Attachments
Issue Links
- relates to
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IGBF-1165 Chromosome.txt files on remote Quickload sites are being ignored
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- To-Do
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IGBB-90 update synonyms.txt
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- Closed
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- Closed
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- Closed
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- To-Do
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- Closed
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Show 1 more links (1 relates to)
Activity
| Field | Original Value | New Value |
|---|---|---|
| Rank | Ranked higher |
| Fix Version/s | 8.4.1 Minor Release [ 10002 ] |
| Sprint | Backlog Grooming Meeting [ 30 ] |
| Rank | Ranked higher |
| Sprint | Backlog Grooming Meeting [ 30 ] | Backlog Grooming Meeting 2 [ 31 ] |
| Sprint | Backlog Grooming Meeting 2 [ 31 ] | Sprint 23 [ 30 ] |
| Rank | Ranked higher |
| Status | Open [ 1 ] | In Progress [ 3 ] |
| Fix Version/s | 8.4.2 Minor Release [ 10004 ] | |
| Fix Version/s | 8.4.1 Minor Release [ 10002 ] |
| Status | In Progress [ 3 ] | Open [ 1 ] |
| Rank | Ranked lower |
| Sprint | Sprint 23 [ 30 ] | Backlog Grooming Meeting [ 32 ] |
| Fix Version/s | 8.4.3 [ 10100 ] | |
| Fix Version/s | 8.4.2 Minor Release [ 10004 ] |
| Sprint | Backlog Grooming Meeting [ 32 ] | Sprint 25 [ 34 ] |
| Rank | Ranked lower |
| Rank | Ranked higher |
| Sprint | Backlog Grooming Meeting [ 34 ] | Backlog Grooming Meeting 2 [ 35 ] |
| Fix Version/s | 8.4.3 Minor Release [ 10100 ] |
| Sprint | Backlog Grooming Meeting 2 [ 35 ] |
| Rank | Ranked higher |
| Assignee | David Norris [ dcnorris ] | Mason Meyer [ mason ] |
| Story Points | 0.25 | 0.5 |
| Workflow | Loraine Lab Workflow [ 16084 ] | Fall 2019 Workflow Update [ 18778 ] |
| Workflow | Fall 2019 Workflow Update [ 18778 ] | Revised Fall 2019 Workflow Update [ 20900 ] |
| Status | Open [ 1 ] | To-Do [ 10305 ] |
| Assignee | Mason Meyer [ mason ] | Nowlan Freese [ nfreese ] |
| Epic Link | IGBF-1765 [ 17855 ] |
| Summary | update species.txt and synonyms.txt | Update synonyms.txt for UCSC |
| Description |
Make sure species listed in the main IGB QL site are represented in species.txt and synonyms.txt in the files that are packaged with IGB.
Check against Galaxy, UCSC. |
Situation: When DAS support was restored in IGB additional genomes provided by UCSC were made available. However, many of these genomes appear oddly in the species or genome dropdown menus. This indicates these genomes may not be included in the synonyms.txt file.
Task: Update the synonyms.txt file. Also make sure species listed in the main IGB QL site are represented in species.txt and synonyms.txt in the files that are packaged with IGB. |
| Story Points | 0.5 | 1 |
| Sprint | Spring 4 2021 May 3 - May 14 [ 120 ] |
| Status | To-Do [ 10305 ] | In Progress [ 3 ] |
| Sprint | Spring 4 2021 May 3 - May 14 [ 120 ] | Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28 [ 120, 121 ] |
| Rank | Ranked higher |
| Story Points | 1 | 3 |
| Link | This issue relates to IGBF-552 [ IGBF-552 ] |
| Assignee | Nowlan Freese [ nfreese ] |
| Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Status | First Level Review in Progress [ 10301 ] | Needs 1st Level Review [ 10005 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Assignee | Omkar Marne [ omarne ] |
| Status | Needs 1st Level Review [ 10005 ] | First Level Review in Progress [ 10301 ] |
| Status | First Level Review in Progress [ 10301 ] | Ready for Pull Request [ 10304 ] |
| Assignee | Omkar Marne [ omarne ] | Nowlan Freese [ nfreese ] |
| Status | Ready for Pull Request [ 10304 ] | Pull Request Submitted [ 10101 ] |
| Assignee | Nowlan Freese [ nfreese ] |
| Status | Pull Request Submitted [ 10101 ] | Reviewing Pull Request [ 10303 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Status | Reviewing Pull Request [ 10303 ] | Merged Needs Testing [ 10002 ] |
| Assignee | Ann Loraine [ aloraine ] |
| Assignee | Omkar Marne [ omarne ] |
| Fix Version/s | 9.1.8 Major Release [ 10605 ] |
| Status | Merged Needs Testing [ 10002 ] | Post-merge Testing In Progress [ 10003 ] |
| Resolution | Done [ 10000 ] | |
| Status | Post-merge Testing In Progress [ 10003 ] | Closed [ 6 ] |
| Assignee | Omkar Marne [ omarne ] | Nowlan Freese [ nfreese ] |