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  1. IGB
  2. IGBF-781

Update synonyms.txt for UCSC

        Details

        • Story Points:
          3
        • Epic Link:
        • Sprint:
          Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28

          Description

          Situation: When DAS support was restored in IGB additional genomes provided by UCSC were made available. However, many of these genomes appear oddly in the species or genome dropdown menus. This indicates these genomes may not be included in the synonyms.txt file.

          Task: Update the synonyms.txt file. Also make sure species listed in the main IGB QL site are represented in species.txt and synonyms.txt in the files that are packaged with IGB.

            Attachments

              Issue Links

              relates to

              Bug - A problem which impairs or prevents the functions of the product. IGBF-1165 Chromosome.txt files on remote Quickload sites are being ignored

              • Major - Major loss of function.
              • To-Do

              Task - A task that needs to be done. IGBB-90 update synonyms.txt

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3053 Investigate: M_musculus_Jun_2020 genome listed in Track Hubs table?

              • Major - Major loss of function.
              • Closed

              Improvement - An improvement or enhancement to an existing feature or task. IGBF-1879 Ensure Galaxy default dbkey values are in synonyms.txt

              • Major - Major loss of function.
              • Closed

              Improvement - An improvement or enhancement to an existing feature or task. IGBF-2861 Investigate species synonyms lookup

              • Major - Major loss of function.
              • To-Do

              Task - A task that needs to be done. IGBF-2793 Restore DASv1 support

              • Major - Major loss of function.
              • Closed

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                  People

                  • Assignee:
                    nfreese Nowlan Freese
                    Reporter:
                    ann.loraine Ann Loraine
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                    Dates

                    • Created:
                      Updated:
                      Resolved: