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  1. IGB
  2. IGBF-3330

Add mm39 (GRCm39) mouse genome to IGB

        Details

        • Type: Task
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          2
        • Epic Link:
        • Sprint:
          Summer 2 2023 May 29, Summer 3 2023 June 12, Summer 4 2023 June 26

          Description

          Situation: A user has asked if we have the GRCm39 (mm39) mouse genome in IGB. We do not support it through Quickloads, but it is available through the UCSC DAS data source.

          Task: Add the GRCm39 (mm39) genome and annotation to IGB.

            Attachments

              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-1617 Update human genome annotation

              • Major - Major loss of function.
              • Closed

              Task - A task that needs to be done. IGBF-3362 Add rn7 rat genome to IGB

              • Minor - Minor loss of function, or other problem where easy workaround is present.
              • Closed

              Task - A task that needs to be done. IGBF-3361 Add galGal5 and galGal6 chicken genome to IGB

              • Minor - Minor loss of function, or other problem where easy workaround is present.
              • To-Do

              Task - A task that needs to be done. IGBF-3363 Investigate psl off by one error

              • Minor - Minor loss of function, or other problem where easy workaround is present.
              • To-Do

              Updated Genome - After a genome has been updated and committed to SVN IGBF-753 Add new zebrafish genome

              • Major - Major loss of function.
              • Closed

              Updated Genome - After a genome has been updated and committed to SVN IGBF-2952 Add UCSC dm6 fruit fly genome and annotation to IGB

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                nfreese Nowlan Freese created issue -
                nfreese Nowlan Freese made changes -
                Field Original Value New Value
                Epic Link IGBF-1765 [ 17855 ]
                nfreese Nowlan Freese made changes -
                Epic Link IGBF-1765 [ 17855 ] IGBF-1478 [ 17563 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-753 [ IGBF-753 ]
                nfreese Nowlan Freese made changes -
                Epic Link IGBF-1478 [ 17563 ] IGBF-1395 [ 17470 ]
                nfreese Nowlan Freese made changes -
                Epic Link IGBF-1395 [ 17470 ] IGBF-1478 [ 17563 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-2952 [ IGBF-2952 ]
                Mdavis4290 Molly Davis made changes -
                Assignee Molly Davis [ molly ]
                Mdavis4290 Molly Davis made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                Mdavis4290 Molly Davis made changes -
                Status In Progress [ 3 ] To-Do [ 10305 ]
                ann.loraine Ann Loraine made changes -
                Sprint Summer 1 2023 May 15 [ 170 ]
                ann.loraine Ann Loraine made changes -
                Assignee Molly Davis [ molly ]
                ann.loraine Ann Loraine made changes -
                Epic Link IGBF-1478 [ 17563 ] IGBF-1765 [ 17855 ]
                ann.loraine Ann Loraine made changes -
                Sprint Summer 2 2023 May 29 [ 171 ]
                nfreese Nowlan Freese made changes -
                Status To-Do [ 10305 ] In Progress [ 3 ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-1617 [ IGBF-1617 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-3361 [ IGBF-3361 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-3362 [ IGBF-3362 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-3363 [ IGBF-3363 ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ]
                nfreese Nowlan Freese made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                ann.loraine Ann Loraine made changes -
                Sprint Summer 2 2023 May 29 [ 171 ] Summer 2 2023 May 29, Summer 3 2023 June 12 [ 171, 172 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                Mdavis4290 Molly Davis made changes -
                Assignee Molly Davis [ molly ]
                ann.loraine Ann Loraine made changes -
                Sprint Summer 2 2023 May 29, Summer 3 2023 June 12 [ 171, 172 ] Summer 2 2023 May 29, Summer 3 2023 June 12, Summer 4 2023 June 26 [ 171, 172, 173 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                Mdavis4290 Molly Davis made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                Mdavis4290 Molly Davis made changes -
                Attachment IGB_Mus-musculus.pdf [ 17908 ]
                Mdavis4290 Molly Davis made changes -
                Assignee Molly Davis [ molly ] Nowlan Freese [ nfreese ]
                Mdavis4290 Molly Davis made changes -
                Status First Level Review in Progress [ 10301 ] Needs 1st Level Review [ 10005 ]
                nfreese Nowlan Freese made changes -
                Status Needs 1st Level Review [ 10005 ] First Level Review in Progress [ 10301 ]
                nfreese Nowlan Freese made changes -
                Status First Level Review in Progress [ 10301 ] Ready for Pull Request [ 10304 ]
                nfreese Nowlan Freese made changes -
                Assignee Nowlan Freese [ nfreese ]
                nfreese Nowlan Freese made changes -
                Status Ready for Pull Request [ 10304 ] Pull Request Submitted [ 10101 ]
                nfreese Nowlan Freese made changes -
                Assignee Ann Loraine [ aloraine ]
                ann.loraine Ann Loraine made changes -
                Status Pull Request Submitted [ 10101 ] Reviewing Pull Request [ 10303 ]
                ann.loraine Ann Loraine made changes -
                Status Reviewing Pull Request [ 10303 ] Merged Needs Testing [ 10002 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ] Nowlan Freese [ nfreese ]
                nfreese Nowlan Freese made changes -
                Status Merged Needs Testing [ 10002 ] Post-merge Testing In Progress [ 10003 ]
                nfreese Nowlan Freese made changes -
                Resolution Done [ 10000 ]
                Status Post-merge Testing In Progress [ 10003 ] Closed [ 6 ]

                  People

                  • Assignee:
                    nfreese Nowlan Freese
                    Reporter:
                    nfreese Nowlan Freese
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    3 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: