Details
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Type: Improvement
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Status: Closed (View Workflow)
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Priority: Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: 9.1.8 Major Release
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Labels:None
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Story Points:3
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Epic Link:
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Sprint:Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28
Description
Situation: When DAS support was restored in IGB additional genomes provided by UCSC were made available. However, many of these genomes appear oddly in the species or genome dropdown menus. This indicates these genomes may not be included in the synonyms.txt file.
Task: Update the synonyms.txt file. Also make sure species listed in the main IGB QL site are represented in species.txt and synonyms.txt in the files that are packaged with IGB.
Attachments
Issue Links
- relates to
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IGBF-1165 Chromosome.txt files on remote Quickload sites are being ignored
- To-Do
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IGBB-90 update synonyms.txt
- Closed
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IGBF-3053 Investigate: M_musculus_Jun_2020 genome listed in Track Hubs table?
- Closed
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IGBF-1879 Ensure Galaxy default dbkey values are in synonyms.txt
- Closed
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IGBF-2861 Investigate species synonyms lookup
- To-Do
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IGBF-2793 Restore DASv1 support
- Closed
Tested on Windows and Linux. The species names aren't abbreviated. They are in their complete name.
Closing the issue.