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  1. Bug Repository
  2. BUG-608

Sequence viewer bugs

          Details

          • Type: Task
          • Status: Closed (View Workflow)
          • Priority: Blocker
          • Resolution: Fixed
          • Labels:
            None

            Description

            Host issue for Sequence viewer bugs:

            This should be closed after all linked bugs and tasks have been tested.

              Attachments

                Issue Links

                is blocked by

                Task - A task that needs to be done. BUG-621 GUI Test: Sequence Viewer

                • Major - Major loss of function.
                • Closed
                relates to

                Bug - A problem which impairs or prevents the functions of the product. BUG-26 Sequence viewer can be made to select past the end of the sequence.

                • Major - Major loss of function.
                • Closed

                Bug - A problem which impairs or prevents the functions of the product. BUG-38 Sequence viewer window title needs to show chromosome number when genomic sequence is selected

                • Major - Major loss of function.
                • Closed

                Bug - A problem which impairs or prevents the functions of the product. BUG-40 Sequence viewer loses start and stop codon indicators (green and red box) when you change colors

                • Major - Major loss of function.
                • Closed

                Bug - A problem which impairs or prevents the functions of the product. BUG-85 Sequence viewer cannot open the sequence for the - strand off of ENSEMBL server data

                • Major - Major loss of function.
                • Closed

                Bug - A problem which impairs or prevents the functions of the product. BUG-91 "Error loading residues" error using 'Show Genomic Sequence' on cytobands

                • Major - Major loss of function.
                • Closed

                Bug - A problem which impairs or prevents the functions of the product. BUG-92 Start and Stop green and red boxes appear OUTSIDE of the sequence if an individual exon is selected

                • Major - Major loss of function.
                • Closed

                Bug - A problem which impairs or prevents the functions of the product. BUG-93 Opening sequence viewer from the Bioviz quickload only produces dashes in the viewer, even though the sequence loads fine into the main window

                • Major - Major loss of function.
                • Closed

                Bug - A problem which impairs or prevents the functions of the product. BUG-122 Sequence Viewer reverse compliment doesn't assign the correct color to the start and stop 'boxes'

                • Major - Major loss of function.
                • Closed

                Bug - A problem which impairs or prevents the functions of the product. BUG-180 problem with genomic sequence viewer on IGB 6.6 release

                • Major - Major loss of function.
                • Closed

                Bug - A problem which impairs or prevents the functions of the product. BUG-410 Can not view highlighted sequence in sequence viewer

                • Major - Major loss of function.
                • Closed

                Bug - A problem which impairs or prevents the functions of the product. BUG-555 Seq Viewer not recognizing 'parent' read when a deletion is in the middle

                • Major - Major loss of function.
                • Closed

                Bug - A problem which impairs or prevents the functions of the product. BUG-564 can't right-click to get sequence viewer option

                • Major - Major loss of function.
                • Closed

                Bug - A problem which impairs or prevents the functions of the product. BUG-571 please add ability to copy protein sequence

                • Major - Major loss of function.
                • Closed

                Bug - A problem which impairs or prevents the functions of the product. BUG-598 View Read Sequence in sequence viewer of INSERTED short reads is completely wrong

                • Major - Major loss of function.
                • Closed

                Bug - A problem which impairs or prevents the functions of the product. BUG-611 Sequence viewer title bar is empty for genomic sequence and incorrect for cytobands

                • Major - Major loss of function.
                • Closed

                Bug - A problem which impairs or prevents the functions of the product. BUG-39 Sequence viewer should have 'Show cDNA only' button grayed out when NON-gene model sequence is being viewed

                • Minor - Minor loss of function, or other problem where easy workaround is present.
                • Closed

                Bug - A problem which impairs or prevents the functions of the product. BUG-249 bad error message for Sequence Viewer

                • Minor - Minor loss of function, or other problem where easy workaround is present.
                • Closed

                Bug - A problem which impairs or prevents the functions of the product. BUG-339 Sequence viewer layout needs some adjustment

                • Minor - Minor loss of function, or other problem where easy workaround is present.
                • Closed

                Bug - A problem which impairs or prevents the functions of the product. BUG-110 Sequence Viewer Resizing Problem

                • Trivial - Cosmetic problem like misspelt words or misaligned text.
                • Closed

                Bug - A problem which impairs or prevents the functions of the product. BUG-324 Sequence Viewer left margin incorrect when showing a single nucleotide

                • Trivial - Cosmetic problem like misspelt words or misaligned text.
                • Closed

                Bug - A problem which impairs or prevents the functions of the product. BUG-629 Sequence Viewer color change to 'Blue on White' and resizing of window leaves black background on right of window

                • Major - Major loss of function.
                • Closed

                  Activity

                  Ascending order - Click to sort in descending order
                  alyssa Alyssa Gulledge (Inactive) created issue -
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Field Original Value New Value
                  Link This issue relates to BUG-26 [ BUG-26 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-37 [ BUG-37 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-38 [ BUG-38 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-39 [ BUG-39 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-40 [ BUG-40 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-85 [ BUG-85 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-93 [ BUG-93 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-598 [ BUG-598 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-564 [ BUG-564 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-555 [ BUG-555 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-410 [ BUG-410 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-387 [ BUG-387 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-339 [ BUG-339 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-324 [ BUG-324 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-180 [ BUG-180 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-122 [ BUG-122 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-110 [ BUG-110 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-95 [ BUG-95 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Description Host issue for Sequence viewer bugs Host issue for Sequence viewer bugs:

                  This should be closed after all linked bugs and tasks have been tested.
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Ann Loraine [ aloraine ] Richard Linchangco [ richard ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue blocks BUG-611 [ BUG-611 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue blocks BUG-611 [ BUG-611 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-611 [ BUG-611 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Link This issue relates to BUG-37 [ BUG-37 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Link This issue relates to BUG-387 [ BUG-387 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Link This issue is blocked by BUG-621 [ BUG-621 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-629 [ BUG-629 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Assignee Richard Linchangco [ richard ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to IGBD-170 [ IGBD-170 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Open [ 1 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-91 [ BUG-91 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-249 [ BUG-249 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-92 [ BUG-92 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-571 [ BUG-571 ]

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      alyssa Alyssa Gulledge (Inactive)
                    • Votes:
                      0 Vote for this issue
                      Watchers:
                      0 Start watching this issue

                      Dates

                      • Created:
                        Updated:
                        Resolved: